Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACN20J_RS40485 Genome accession   NZ_CP183383
Coordinates   9228396..9229421 (-) Length   341 a.a.
NCBI ID   WP_189839698.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9223396..9234421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS40460 (ACN20J_40450) - 9223732..9224463 (+) 732 WP_419667855.1 5-oxoprolinase subunit B family protein -
  ACN20J_RS40465 (ACN20J_40455) - 9224460..9225515 (+) 1056 WP_419667856.1 biotin-dependent carboxyltransferase family protein -
  ACN20J_RS40470 (ACN20J_40460) - 9225591..9226388 (+) 798 WP_190227254.1 SDR family oxidoreductase -
  ACN20J_RS40475 (ACN20J_40465) - 9226507..9227676 (+) 1170 WP_419667857.1 pyridoxal phosphate-dependent aminotransferase -
  ACN20J_RS40480 (ACN20J_40470) - 9227709..9228293 (+) 585 WP_361990570.1 TetR/AcrR family transcriptional regulator -
  ACN20J_RS40485 (ACN20J_40475) cytR 9228396..9229421 (-) 1026 WP_189839698.1 LacI family DNA-binding transcriptional regulator Regulator
  ACN20J_RS40490 (ACN20J_40480) - 9229758..9231131 (+) 1374 WP_190227258.1 ABC transporter substrate-binding protein -
  ACN20J_RS40495 (ACN20J_40485) - 9231256..9232164 (+) 909 WP_189839696.1 carbohydrate ABC transporter permease -
  ACN20J_RS40500 (ACN20J_40490) - 9232167..9233057 (+) 891 WP_419667858.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36408.48 Da        Isoelectric Point: 6.0037

>NTDB_id=983136 ACN20J_RS40485 WP_189839698.1 9228396..9229421(-) (cytR) [Streptomyces sp. 2-1]
MAGARLKDVAERAGVSIKTVSNVVRGEIRVAEQTRERVLRAIAELDYQPNASARHLRTGRSGIIALAVPELVAPYFAELA
AEVIAAAKKRGCTVLIEDTGGDPAEELRIACGLSDPLIDGVLLSPLSLDEAMLATRERRVPLVLLGEQSYRIPADHVLID
NSAAAQEATEHLLRLGRRRIAVIGQPSDRAHATTVQRMHGFLTALHAAGVPHDPRLAPDTVAFTRADGASAMRVLLGLDE
PPDAVFCFSDLLASGAVRAAHEHGLRVPRDLAVVGFDDIQETGYSVPSLTTVSPNKREIAELAVDAVLQRITADAEAPHT
RLTAGYSLVVRESTQPDSPPG

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=983136 ACN20J_RS40485 WP_189839698.1 9228396..9229421(-) (cytR) [Streptomyces sp. 2-1]
ATGGCAGGTGCACGCCTCAAGGACGTCGCGGAACGCGCGGGTGTGTCGATCAAGACGGTGTCGAACGTCGTCCGGGGCGA
GATCCGTGTCGCGGAGCAGACCCGGGAGCGGGTACTGCGCGCGATCGCCGAGCTCGACTACCAGCCCAACGCCTCCGCAC
GCCACTTGCGCACCGGCCGCAGCGGGATCATCGCGCTGGCCGTCCCCGAGCTGGTCGCGCCGTACTTCGCGGAGCTGGCC
GCGGAGGTCATCGCGGCCGCCAAGAAGCGCGGCTGCACCGTGCTCATCGAGGACACCGGCGGGGATCCCGCGGAGGAACT
GCGTATCGCCTGCGGCCTGAGCGACCCGCTCATCGACGGTGTGCTGCTCAGCCCGCTCAGCCTCGACGAGGCGATGCTCG
CCACTCGCGAGCGCCGCGTGCCCCTCGTACTCCTGGGAGAGCAGTCGTACAGGATCCCGGCGGACCATGTACTGATCGAC
AACTCCGCGGCGGCACAAGAGGCGACCGAGCACCTGCTCCGGCTCGGCCGCCGGCGCATCGCAGTCATCGGCCAGCCGTC
GGACCGGGCCCATGCGACGACGGTGCAGCGCATGCACGGCTTCCTGACCGCGCTGCACGCCGCGGGTGTGCCGCACGACC
CCAGGCTGGCCCCGGACACCGTGGCGTTCACCCGTGCCGACGGCGCCTCCGCCATGCGGGTCCTGCTCGGTCTGGACGAG
CCACCGGACGCGGTCTTCTGCTTCAGCGACCTGCTCGCCTCCGGCGCGGTGCGCGCGGCGCACGAGCACGGCCTGCGGGT
GCCGCGCGACCTGGCGGTCGTGGGCTTCGACGACATCCAGGAGACCGGCTACAGCGTGCCGTCACTGACCACCGTGTCGC
CCAACAAGCGAGAGATCGCCGAACTGGCGGTGGACGCGGTGCTGCAGAGAATCACCGCCGACGCGGAGGCCCCCCATACG
AGACTCACCGCGGGGTATTCGCTGGTGGTACGGGAGAGCACGCAGCCGGATTCGCCGCCGGGGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-334)

Bacterial regulatory proteins, lacI family (LacI)

(6-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.462

99.12

0.381
  cytR Vibrio parahaemolyticus RIMD 2210633

37.91

98.24

0.372