Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACN20J_RS28990 Genome accession   NZ_CP183383
Coordinates   6535631..6536629 (+) Length   332 a.a.
NCBI ID   WP_189837038.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6530631..6541629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS28965 (ACN20J_28960) - 6530755..6531399 (+) 645 WP_189837033.1 TetR/AcrR family transcriptional regulator -
  ACN20J_RS28970 (ACN20J_28965) - 6531566..6533101 (+) 1536 WP_419667157.1 MFS transporter -
  ACN20J_RS28975 (ACN20J_28970) - 6533414..6533917 (-) 504 WP_189837035.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN20J_RS28980 (ACN20J_28975) - 6534067..6534867 (+) 801 WP_360767176.1 dioxygenase -
  ACN20J_RS28985 (ACN20J_28980) - 6534934..6535452 (-) 519 WP_398892897.1 GNAT family N-acetyltransferase -
  ACN20J_RS28990 (ACN20J_28985) rpoS 6535631..6536629 (+) 999 WP_189837038.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACN20J_RS28995 (ACN20J_28990) - 6537459..6538427 (-) 969 WP_189837039.1 helix-turn-helix transcriptional regulator -
  ACN20J_RS29000 (ACN20J_28995) - 6538546..6540078 (+) 1533 WP_419667158.1 MFS transporter -
  ACN20J_RS29005 (ACN20J_29000) - 6540223..6540420 (+) 198 WP_419667159.1 hypothetical protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37214.06 Da        Isoelectric Point: 5.0443

>NTDB_id=983102 ACN20J_RS28990 WP_189837038.1 6535631..6536629(+) (rpoS) [Streptomyces sp. 2-1]
MATRAVARRKSASGGSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVDLSQTIEAGVFAQQILDGEVTDTQVK
ASREELEALVADAERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELDTKPERVVDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=983102 ACN20J_RS28990 WP_189837038.1 6535631..6536629(+) (rpoS) [Streptomyces sp. 2-1]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCAGGCGGAAGCGACGCGGCACGCAGTGTTCGCGTCGTAGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGCACACCGCTGCTCGATGCCGCCAAGGAAG
TGGACCTCTCCCAGACCATCGAGGCGGGCGTCTTCGCCCAGCAGATCCTCGACGGTGAGGTCACCGACACACAGGTGAAG
GCCTCCCGCGAGGAGCTCGAAGCGCTGGTCGCCGACGCCGAGCGGGCCAAGGACATCTTCATCCGGTCGAACCTCCGCCT
GGTCGTGGCGGTCGCCCGCCGCTACCCGCGCAGCGGCCTGCCGCTCCTGGACCTGATCCAGGAGGGGAACGCGGGCCTGG
TCCGAGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGTGAGCCGGAGCCCGCGGAGATCGCCGCGGAGCTGGACACGAAGCCGGAGC
GCGTGGTCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGTGACCTGCTGGAGGACACCTCGGCGGTCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGACGCCGCCGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.361

0.361