Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACN20J_RS22130 Genome accession   NZ_CP183383
Coordinates   5030731..5032140 (+) Length   469 a.a.
NCBI ID   WP_419666596.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5025731..5037140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS22115 (ACN20J_22110) - 5026627..5027580 (-) 954 WP_189843130.1 Ppx/GppA phosphatase family protein -
  ACN20J_RS22120 (ACN20J_22115) - 5027652..5028512 (+) 861 WP_307523572.1 hypothetical protein -
  ACN20J_RS22125 (ACN20J_22120) - 5028619..5030511 (-) 1893 WP_419666595.1 BACON domain-containing protein -
  ACN20J_RS22130 (ACN20J_22125) radA/sms 5030731..5032140 (+) 1410 WP_419666596.1 DNA repair protein RadA Machinery gene
  ACN20J_RS22135 (ACN20J_22130) disA 5032211..5033335 (+) 1125 WP_055618634.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACN20J_RS22140 (ACN20J_22135) - 5033677..5034498 (-) 822 WP_361910239.1 hypothetical protein -
  ACN20J_RS22145 (ACN20J_22140) - 5034805..5035734 (+) 930 WP_419666597.1 A/G-specific adenine glycosylase -
  ACN20J_RS22150 (ACN20J_22145) - 5036006..5036563 (+) 558 WP_055618595.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49798.03 Da        Isoelectric Point: 7.7221

>NTDB_id=983086 ACN20J_RS22130 WP_419666596.1 5030731..5032140(+) (radA/sms) [Streptomyces sp. 2-1]
MAARTKTAKDRPSYRCTECGWQAAKWLGRCPECQAWGTIDEYGTPAVRTTAPGRVTTSALPIGEVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYITGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMSQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDTQI
PTPRRTTSGLETSRVQMMLAVLEQRGRISAIGKRDIYTATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADMGDALRVLPRSRRREAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=983086 ACN20J_RS22130 WP_419666596.1 5030731..5032140(+) (radA/sms) [Streptomyces sp. 2-1]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGGCGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGACGAGTACGGCACGCCCGCGGTACGGACGACGGCCCCCGGCC
GGGTCACCACGTCCGCGCTGCCCATCGGCGAGGTCGACGGCCGGCAGGCGACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTACCGGGCGCGGTCGTGCTCGTGGCGGGCGAACCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCGAAGGCGGCCAGTGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTGGCGGCGGAGACCGATCTGGCCGCGGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCGTCGACTCCGTGCAGACGGTGGCCTCTCCGGAGATCGACGGCGC
CCCCGGAGGCATGTCCCAGGTCCGTGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACGCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGACCGCGCCTCCTGGAGCACCTCGTGGACGTCGTCCTCAGCTTC
GAGGGCGACCGGCACGCGCGCCTTCGGCTCGTACGGGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTGACCGACCCGAGCGGTCTGTTCCTGACCCGCCGTGCCGAGCCGGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAAGGCCGCCGCCCCCTCGTGGCCGAGGTCCAGGCGCTCACCGTGGACACCCAGATC
CCCACGCCGAGGCGTACGACCTCCGGTCTGGAGACCTCCCGGGTCCAGATGATGCTCGCCGTTCTGGAGCAGCGCGGCCG
GATCAGTGCCATCGGGAAGCGGGACATCTACACCGCGACGGTCGGCGGTGTGAAGCTCACCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCGCTGGCCAGCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGGGAAGTGGGCCTC
GCAGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTCGCCGAAGCCCATCGTCTGGGCTTCACCCACGCCCTCGT
TCCGGGCGATCCGGGCAAGATCCCTGCGGGCATGAAGGTCCTGGAAGTCGCCGACATGGGAGACGCGCTGAGGGTCCTCC
CGAGGTCGCGTCGGCGAGAGGCCCCACGGGACGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

43.111

95.949

0.414
  radA Streptococcus pneumoniae R6

43.111

95.949

0.414
  radA Streptococcus pneumoniae Rx1

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

43.111

95.949

0.414
  radA Streptococcus mitis NCTC 12261

44.601

90.832

0.405
  radA Streptococcus mitis SK321

44.601

90.832

0.405

Multiple sequence alignment