Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACN20J_RS17040 Genome accession   NZ_CP183383
Coordinates   3859043..3860776 (+) Length   577 a.a.
NCBI ID   WP_189837990.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3854043..3865776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS17000 (ACN20J_16995) - 3854195..3854638 (-) 444 WP_189837994.1 DUF7144 family membrane protein -
  ACN20J_RS17005 (ACN20J_17000) - 3854882..3855022 (+) 141 WP_419666235.1 hypothetical protein -
  ACN20J_RS17010 (ACN20J_17005) - 3855591..3856025 (+) 435 WP_419666236.1 hypothetical protein -
  ACN20J_RS17030 (ACN20J_17025) - 3857049..3857357 (+) 309 WP_055615009.1 YtxH domain-containing protein -
  ACN20J_RS17035 (ACN20J_17030) - 3857421..3858875 (+) 1455 WP_189837991.1 FGGY family carbohydrate kinase -
  ACN20J_RS17040 (ACN20J_17035) rcrP 3859043..3860776 (+) 1734 WP_189837990.1 ABC transporter ATP-binding protein Regulator
  ACN20J_RS17045 (ACN20J_17040) rcrQ 3860776..3862704 (+) 1929 WP_189837989.1 ABC transporter ATP-binding protein Regulator
  ACN20J_RS17050 (ACN20J_17045) - 3862935..3864230 (-) 1296 WP_189837988.1 RNA polymerase sigma factor -
  ACN20J_RS17055 (ACN20J_17050) - 3864369..3865070 (+) 702 WP_189837987.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62551.75 Da        Isoelectric Point: 6.4057

>NTDB_id=983073 ACN20J_RS17040 WP_189837990.1 3859043..3860776(+) (rcrP) [Streptomyces sp. 2-1]
MLIRLLRTYLTPYKKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVDGDTGYILTFGALMIGISLAQVVCNIGAVYYGA
RTAAAVGRDIRAGIFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEEERFRKANADLTEVSLGTGRMLAL
MFPIVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PKAPVLELRRHGHLEIRGAGFRYPGAEEPVLRTIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVR
TVEPRLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDATIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALAQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGSGRHHELMATN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=983073 ACN20J_RS17040 WP_189837990.1 3859043..3860776(+) (rcrP) [Streptomyces sp. 2-1]
GTGCTCATACGACTCCTGCGTACCTATCTCACGCCCTACAAGAAACCCATCGCCCTGCTCGTACTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCGACGGTGACACGGGCTACA
TCCTGACCTTCGGTGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGTGCC
CGTACGGCCGCCGCGGTCGGACGGGACATCCGGGCCGGCATCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
TCACTTCGGGGCGCCGTCGCTGATCACCCGCACGACGAACGACGTGCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCTTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCCTGGCGCTCGGTCTCGACGTACCGCTGTCCGGGGTG
CTGCTCGCCGTCGTGCCGGTGCTCGGGATCTCGGTGAGCCTCATCGTGCGCCGGCTGCGTCCGCTGTTCCGCACGATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
GGTACGAGGAGGAGCGCTTCCGGAAGGCGAACGCCGACCTCACCGAGGTGTCCCTCGGGACCGGGCGGATGCTGGCGCTG
ATGTTCCCCATCGTCATGACGGTGGTGAACGTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCAGCAGTGTGGTTCCG
CCGAAGGCGCCGGTCCTGGAGCTGCGGCGGCACGGGCATCTGGAGATCCGGGGCGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAGGACCATCGACCTGGTGGCCCTGCCCGGTGAGACCACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCCAGGTGCTGGTGGACGGCGTCGACGTACGC
ACGGTCGAGCCGCGGCTGCTCGCGCGCACGGTGGGCCTCGTACCGCAGAAGCCGTACCTCTTCGCGGGCACGGTGGCGAC
CAATCTCCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGGGTCTTGAGAACGGTCTCGACGCGACGATCGCGCAGGGCGGGACGAACGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACCCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCGTTGCGCAGGGCGCTCGCGCAGGAGACGGCCGAGGCGACGGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGTTCGGGCCGCCACCACGAGCTGATGGCGACGAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(353-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.775

93.934

0.383

Multiple sequence alignment