Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NST24_RS11910 Genome accession   NZ_CP151977
Coordinates   2319894..2320664 (-) Length   256 a.a.
NCBI ID   WP_342461807.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0286     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2314894..2325664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS11890 (NST24_11890) - 2314987..2315808 (-) 822 WP_342461806.1 pyruvate, water dikinase regulatory protein -
  NST24_RS11895 (NST24_11895) - 2315834..2316472 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NST24_RS11900 (NST24_11900) glyS 2316639..2318684 (-) 2046 WP_327871861.1 glycine--tRNA ligase subunit beta -
  NST24_RS11905 (NST24_11905) glyQ 2318677..2319564 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  NST24_RS11910 (NST24_11910) recO 2319894..2320664 (-) 771 WP_342461807.1 DNA repair protein RecO Machinery gene
  NST24_RS11915 (NST24_11915) - 2320700..2320843 (-) 144 WP_008342408.1 YqzL family protein -
  NST24_RS11920 (NST24_11920) era 2320991..2321896 (-) 906 WP_007501305.1 GTPase Era -
  NST24_RS11925 (NST24_11925) - 2321889..2322287 (-) 399 WP_008342410.1 cytidine deaminase -
  NST24_RS11930 (NST24_11930) - 2322400..2322786 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  NST24_RS11935 (NST24_11935) ybeY 2322764..2323243 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  NST24_RS11940 (NST24_11940) - 2323244..2325334 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29299.00 Da        Isoelectric Point: 8.4335

>NTDB_id=983036 NST24_RS11910 WP_342461807.1 2319894..2320664(-) (recO) [Bacillus sp. FSL R5-0286]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLIDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=983036 NST24_RS11910 WP_342461807.1 2319894..2320664(-) (recO) [Bacillus sp. FSL R5-0286]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCACTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATAGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment