Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NST24_RS10420 Genome accession   NZ_CP151977
Coordinates   2054802..2055437 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus sp. FSL R5-0286     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049802..2060437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS10380 (NST24_10380) - 2049966..2051084 (+) 1119 WP_342461743.1 NADH-dependent flavin oxidoreductase -
  NST24_RS10385 (NST24_10385) - 2051134..2051640 (-) 507 WP_058336717.1 PTS glucose transporter subunit IIA -
  NST24_RS10390 (NST24_10390) - 2051809..2052228 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NST24_RS10395 (NST24_10395) - 2052250..2052702 (-) 453 WP_342461744.1 YppG family protein -
  NST24_RS10400 (NST24_10400) - 2052811..2053191 (-) 381 WP_342461745.1 YppE family protein -
  NST24_RS10405 (NST24_10405) - 2053241..2053474 (-) 234 WP_224558417.1 DUF5446 family protein -
  NST24_RS10410 (NST24_10410) sspM 2053671..2053775 (+) 105 WP_342461746.1 acid-soluble spore protein SspM -
  NST24_RS10415 (NST24_10415) - 2053799..2054755 (-) 957 WP_342461747.1 DUF2515 domain-containing protein -
  NST24_RS10420 (NST24_10420) recU 2054802..2055437 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  NST24_RS10425 (NST24_10425) - 2055457..2058129 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  NST24_RS10430 (NST24_10430) - 2058165..2058674 (-) 510 WP_342461748.1 YpoC family protein -
  NST24_RS10435 (NST24_10435) nth 2058671..2059333 (-) 663 WP_008344602.1 endonuclease III -
  NST24_RS10440 (NST24_10440) - 2059351..2060055 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=983030 NST24_RS10420 WP_017359733.1 2054802..2055437(+) (recU) [Bacillus sp. FSL R5-0286]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983030 NST24_RS10420 WP_017359733.1 2054802..2055437(+) (recU) [Bacillus sp. FSL R5-0286]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment