Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST24_RS01990 Genome accession   NZ_CP151977
Coordinates   376807..377235 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus sp. FSL R5-0286     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 371807..382235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS01960 (NST24_01960) - 371951..372280 (+) 330 WP_024718960.1 YckD family protein -
  NST24_RS01965 (NST24_01965) - 372327..373091 (-) 765 WP_342462231.1 MBL fold metallo-hydrolase -
  NST24_RS01970 (NST24_01970) - 373207..373626 (+) 420 WP_342462232.1 Lrp/AsnC family transcriptional regulator -
  NST24_RS01975 (NST24_01975) - 373651..374457 (+) 807 WP_342462233.1 AAC(3) family N-acetyltransferase -
  NST24_RS01980 (NST24_01980) comJ 374459..374845 (-) 387 WP_039166300.1 competence protein ComJ -
  NST24_RS01985 (NST24_01985) - 374983..376680 (-) 1698 WP_342462234.1 methyl-accepting chemotaxis protein -
  NST24_RS01990 (NST24_01990) nucA/comI 376807..377235 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST24_RS01995 (NST24_01995) - 377604..379673 (+) 2070 WP_342462235.1 hydantoinase/oxoprolinase family protein -
  NST24_RS02000 (NST24_02000) - 379663..381648 (+) 1986 WP_342462236.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=983004 NST24_RS01990 WP_007498233.1 376807..377235(-) (nucA/comI) [Bacillus sp. FSL R5-0286]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=983004 NST24_RS01990 WP_007498233.1 376807..377235(-) (nucA/comI) [Bacillus sp. FSL R5-0286]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACTGCGAAGCACA
TAGAAGAAGCAATTGATGAAGGGCATTCTTCCATTTGCACCATTGATCGGAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGTGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment