Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NSQ60_RS11560 Genome accession   NZ_CP151976
Coordinates   2246710..2247513 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus sp. FSL W8-0502     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241710..2252513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS11540 (NSQ60_11540) - 2243915..2244151 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  NSQ60_RS11545 (NSQ60_11545) - 2244188..2244925 (-) 738 WP_041117937.1 glycerophosphodiester phosphodiesterase -
  NSQ60_RS11550 (NSQ60_11550) - 2245153..2246253 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  NSQ60_RS11555 (NSQ60_11555) - 2246241..2246438 (-) 198 WP_024422934.1 hypothetical protein -
  NSQ60_RS11560 (NSQ60_11560) spo0A 2246710..2247513 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  NSQ60_RS11565 (NSQ60_11565) spoIVB 2247799..2249076 (-) 1278 WP_046311727.1 SpoIVB peptidase -
  NSQ60_RS11570 (NSQ60_11570) recN 2249276..2251009 (-) 1734 WP_041117941.1 DNA repair protein RecN Machinery gene
  NSQ60_RS11575 (NSQ60_11575) argR 2251043..2251492 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  NSQ60_RS11580 (NSQ60_11580) - 2251656..2252510 (-) 855 WP_041117943.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=982970 NSQ60_RS11560 WP_024422935.1 2246710..2247513(-) (spo0A) [Bacillus sp. FSL W8-0502]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=982970 NSQ60_RS11560 WP_024422935.1 2246710..2247513(-) (spo0A) [Bacillus sp. FSL W8-0502]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATTACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGATTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment