Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ60_RS09160 Genome accession   NZ_CP151976
Coordinates   1790259..1790639 (+) Length   126 a.a.
NCBI ID   WP_044335941.1    Uniprot ID   A0AAP7UKB4
Organism   Bacillus sp. FSL W8-0502     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1785259..1795639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS09150 (NSQ60_09150) - 1785754..1788897 (+) 3144 WP_046311196.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  NSQ60_RS09155 (NSQ60_09155) - 1789091..1789999 (+) 909 WP_024425124.1 trypsin-like serine protease -
  NSQ60_RS09160 (NSQ60_09160) nucA/comI 1790259..1790639 (+) 381 WP_044335941.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ60_RS09165 (NSQ60_09165) - 1790783..1791631 (+) 849 WP_046311199.1 STAS domain-containing protein -
  NSQ60_RS09170 (NSQ60_09170) - 1791665..1792207 (-) 543 WP_046311201.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ60_RS09175 (NSQ60_09175) - 1792504..1792947 (+) 444 WP_046311203.1 hypothetical protein -
  NSQ60_RS09180 (NSQ60_09180) lexA 1792993..1793613 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  NSQ60_RS09185 (NSQ60_09185) yneA 1793772..1794083 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  NSQ60_RS09190 (NSQ60_09190) - 1794101..1794748 (+) 648 WP_034283427.1 recombinase family protein -
  NSQ60_RS09195 (NSQ60_09195) - 1794818..1795048 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13727.41 Da        Isoelectric Point: 8.5068

>NTDB_id=982968 NSQ60_RS09160 WP_044335941.1 1790259..1790639(+) (nucA/comI) [Bacillus sp. FSL W8-0502]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=982968 NSQ60_RS09160 WP_044335941.1 1790259..1790639(+) (nucA/comI) [Bacillus sp. FSL W8-0502]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTACAATATGTTAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment