Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ60_RS07040 Genome accession   NZ_CP151976
Coordinates   1373717..1373995 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus sp. FSL W8-0502     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368717..1378995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS07015 (NSQ60_07015) - 1368813..1369088 (-) 276 WP_034281618.1 hypothetical protein -
  NSQ60_RS07020 (NSQ60_07020) - 1369232..1370851 (+) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  NSQ60_RS07025 (NSQ60_07025) - 1370887..1372119 (-) 1233 WP_046310819.1 aminopeptidase -
  NSQ60_RS07030 (NSQ60_07030) - 1372227..1372358 (-) 132 WP_003210922.1 protein YkpC -
  NSQ60_RS07035 (NSQ60_07035) mreBH 1372433..1373440 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  NSQ60_RS07040 (NSQ60_07040) abrB 1373717..1373995 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSQ60_RS07045 (NSQ60_07045) - 1374141..1375451 (+) 1311 WP_046310821.1 ATP-binding protein -
  NSQ60_RS07050 (NSQ60_07050) - 1375456..1376292 (+) 837 WP_046310824.1 gamma-glutamylcyclotransferase family protein -
  NSQ60_RS07055 (NSQ60_07055) - 1376330..1376998 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  NSQ60_RS07060 (NSQ60_07060) ade 1377261..1378991 (+) 1731 WP_046310827.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=982963 NSQ60_RS07040 WP_024424746.1 1373717..1373995(+) (abrB) [Bacillus sp. FSL W8-0502]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=982963 NSQ60_RS07040 WP_024424746.1 1373717..1373995(+) (abrB) [Bacillus sp. FSL W8-0502]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment