Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NSQ60_RS06930 Genome accession   NZ_CP151976
Coordinates   1353757..1354329 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348757..1359329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS06900 (NSQ60_06900) dapD 1348873..1349583 (+) 711 WP_008347987.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NSQ60_RS06905 (NSQ60_06905) - 1349665..1350795 (+) 1131 WP_034281599.1 N-acetyldiaminopimelate deacetylase -
  NSQ60_RS06910 (NSQ60_06910) - 1350846..1351088 (+) 243 WP_024424725.1 YkuS family protein -
  NSQ60_RS06915 (NSQ60_06915) - 1351111..1351920 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  NSQ60_RS06920 (NSQ60_06920) ahpA 1352192..1352734 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  NSQ60_RS06925 (NSQ60_06925) - 1352817..1353275 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  NSQ60_RS06930 (NSQ60_06930) rok 1353757..1354329 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  NSQ60_RS06935 (NSQ60_06935) - 1354377..1355294 (-) 918 WP_046310808.1 hypothetical protein -
  NSQ60_RS06940 (NSQ60_06940) - 1355380..1355961 (+) 582 WP_046310811.1 molybdenum cofactor guanylyltransferase -
  NSQ60_RS06945 (NSQ60_06945) - 1355991..1357007 (+) 1017 WP_046310813.1 thiazole biosynthesis adenylyltransferase ThiF -
  NSQ60_RS06950 (NSQ60_06950) glp 1357017..1358294 (+) 1278 WP_046310815.1 gephyrin-like molybdotransferase Glp -
  NSQ60_RS06955 (NSQ60_06955) mobB 1358276..1358800 (+) 525 WP_034281948.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NSQ60_RS06960 (NSQ60_06960) - 1358797..1359288 (+) 492 WP_034281605.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=982962 NSQ60_RS06930 WP_024426871.1 1353757..1354329(+) (rok) [Bacillus sp. FSL W8-0502]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=982962 NSQ60_RS06930 WP_024426871.1 1353757..1354329(+) (rok) [Bacillus sp. FSL W8-0502]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCGCCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCTAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAGCGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGTGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8

Multiple sequence alignment