Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NSQ60_RS06815 Genome accession   NZ_CP151976
Coordinates   1335675..1336136 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330675..1341136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS06790 (NSQ60_06790) - 1331278..1332162 (+) 885 WP_024424706.1 cation diffusion facilitator family transporter -
  NSQ60_RS06795 (NSQ60_06795) - 1332227..1332379 (-) 153 WP_162842519.1 hypothetical protein -
  NSQ60_RS06800 (NSQ60_06800) - 1332681..1333220 (+) 540 WP_024424707.1 RDD family protein -
  NSQ60_RS06805 (NSQ60_06805) - 1333346..1334656 (+) 1311 WP_046312211.1 MFS transporter -
  NSQ60_RS06810 (NSQ60_06810) - 1334730..1335638 (+) 909 WP_024424709.1 chemotaxis protein -
  NSQ60_RS06815 (NSQ60_06815) kre 1335675..1336136 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NSQ60_RS06820 (NSQ60_06820) - 1336452..1336883 (+) 432 WP_046310795.1 hypothetical protein -
  NSQ60_RS06825 (NSQ60_06825) - 1337023..1337238 (-) 216 WP_046310797.1 hypothetical protein -
  NSQ60_RS06830 (NSQ60_06830) - 1337461..1338738 (-) 1278 WP_024426859.1 MFS transporter -
  NSQ60_RS06835 (NSQ60_06835) - 1338812..1339309 (-) 498 WP_034623332.1 L,D-transpeptidase family protein -
  NSQ60_RS06840 (NSQ60_06840) - 1339466..1340323 (-) 858 WP_046310800.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=982961 NSQ60_RS06815 WP_008356877.1 1335675..1336136(-) (kre) [Bacillus sp. FSL W8-0502]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=982961 NSQ60_RS06815 WP_008356877.1 1335675..1336136(-) (kre) [Bacillus sp. FSL W8-0502]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment