Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSS78_RS19470 Genome accession   NZ_CP151974
Coordinates   3797413..3797958 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3792413..3802958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS19445 (NSS78_19445) - 3792675..3793283 (-) 609 WP_034620304.1 alpha/beta hydrolase -
  NSS78_RS19450 (NSS78_19450) - 3793280..3794251 (-) 972 WP_249118366.1 ring-cleaving dioxygenase -
  NSS78_RS19455 (NSS78_19455) opuFB 3794443..3795960 (-) 1518 WP_212046505.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  NSS78_RS19460 (NSS78_19460) - 3795953..3796918 (-) 966 WP_212046504.1 ABC transporter ATP-binding protein -
  NSS78_RS19465 (NSS78_19465) rpsR 3797129..3797368 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  NSS78_RS19470 (NSS78_19470) ssbA 3797413..3797958 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  NSS78_RS19475 (NSS78_19475) rpsF 3797995..3798282 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  NSS78_RS19480 (NSS78_19480) ychF 3798391..3799491 (-) 1101 WP_003214682.1 redox-regulated ATPase YchF -
  NSS78_RS19485 (NSS78_19485) - 3799708..3799914 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  NSS78_RS19490 (NSS78_19490) - 3800209..3801528 (+) 1320 WP_212046503.1 hydrolase -
  NSS78_RS19495 (NSS78_19495) - 3801544..3801954 (+) 411 WP_003215287.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=982876 NSS78_RS19470 WP_003215157.1 3797413..3797958(-) (ssbA) [Bacillus sp. FSL W8-0920]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=982876 NSS78_RS19470 WP_003215157.1 3797413..3797958(-) (ssbA) [Bacillus sp. FSL W8-0920]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment