Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSS78_RS10290 Genome accession   NZ_CP151974
Coordinates   2069544..2070155 (+) Length   203 a.a.
NCBI ID   WP_212046026.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064544..2075155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS10250 (NSS78_10250) - 2064710..2065828 (+) 1119 WP_212045972.1 NADH-dependent flavin oxidoreductase -
  NSS78_RS10255 (NSS78_10255) - 2065881..2066387 (-) 507 WP_003216086.1 PTS glucose transporter subunit IIA -
  NSS78_RS10260 (NSS78_10260) - 2066555..2066974 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  NSS78_RS10265 (NSS78_10265) - 2066995..2067447 (-) 453 WP_212045971.1 YppG family protein -
  NSS78_RS10270 (NSS78_10270) - 2067554..2067925 (-) 372 WP_137055055.1 YppE family protein -
  NSS78_RS10275 (NSS78_10275) - 2067983..2068219 (-) 237 WP_044141135.1 DUF5446 family protein -
  NSS78_RS10280 (NSS78_10280) sspM 2068413..2068517 (+) 105 WP_050943866.1 acid-soluble spore protein SspM -
  NSS78_RS10285 (NSS78_10285) - 2068541..2069497 (-) 957 WP_050943865.1 DUF2515 domain-containing protein -
  NSS78_RS10290 (NSS78_10290) recU 2069544..2070155 (+) 612 WP_212046026.1 Holliday junction resolvase RecU Machinery gene
  NSS78_RS10295 (NSS78_10295) - 2070199..2072913 (+) 2715 WP_212045970.1 PBP1A family penicillin-binding protein -
  NSS78_RS10300 (NSS78_10300) - 2072948..2073457 (-) 510 WP_212045969.1 YpoC family protein -
  NSS78_RS10305 (NSS78_10305) nth 2073454..2074116 (-) 663 WP_012010351.1 endonuclease III -
  NSS78_RS10310 (NSS78_10310) - 2074134..2074838 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23297.53 Da        Isoelectric Point: 8.9930

>NTDB_id=982847 NSS78_RS10290 WP_212046026.1 2069544..2070155(+) (recU) [Bacillus sp. FSL W8-0920]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKLGGICFVIISAFGSVYYLPAPDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=982847 NSS78_RS10290 WP_212046026.1 2069544..2070155(+) (recU) [Bacillus sp. FSL W8-0920]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAGATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAGCAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAGACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCTAGGCGGCATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTCCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGATGAATTAATGGAAGCCGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

99.507

0.719

Multiple sequence alignment