Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R8635_RS09475 Genome accession   NZ_AP026924
Coordinates   1843065..1843991 (-) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838065..1848991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS09455 (PC0062_18830) - 1838073..1839419 (+) 1347 WP_268217916.1 IS1380-like element ISSpn5 family transposase -
  R8635_RS09460 - 1839701..1840977 (+) 1277 Protein_1879 ISL3 family transposase -
  R8635_RS09465 (PC0062_18860) amiF 1841052..1841978 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  R8635_RS09470 (PC0062_18870) amiE 1841989..1843056 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  R8635_RS09475 (PC0062_18880) amiD 1843065..1843991 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R8635_RS09480 (PC0062_18890) amiC 1843991..1845487 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  R8635_RS09485 (PC0062_18900) amiA3 1845554..1847533 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=98284 R8635_RS09475 WP_000103700.1 1843065..1843991(-) (amiD) [Streptococcus pneumoniae strain PZ900700063]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=98284 R8635_RS09475 WP_000103700.1 1843065..1843991(-) (amiD) [Streptococcus pneumoniae strain PZ900700063]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment