Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   NSQ52_RS11245 Genome accession   NZ_CP151973
Coordinates   2213309..2214112 (-) Length   267 a.a.
NCBI ID   WP_342473341.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2208309..2219112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS11230 (NSQ52_11230) - 2210525..2210761 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  NSQ52_RS11235 (NSQ52_11235) - 2210795..2211532 (-) 738 WP_274660593.1 glycerophosphodiester phosphodiesterase -
  NSQ52_RS11240 (NSQ52_11240) - 2211759..2212859 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  NSQ52_RS11245 (NSQ52_11245) spo0A 2213309..2214112 (-) 804 WP_342473341.1 sporulation transcription factor Spo0A Regulator
  NSQ52_RS11250 (NSQ52_11250) spoIVB 2214396..2215673 (-) 1278 WP_007501161.1 SpoIVB peptidase -
  NSQ52_RS11255 (NSQ52_11255) recN 2215872..2217605 (-) 1734 WP_342473342.1 DNA repair protein RecN Machinery gene
  NSQ52_RS11260 (NSQ52_11260) argR 2217640..2218089 (-) 450 WP_007501163.1 transcriptional regulator ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29905.48 Da        Isoelectric Point: 6.6123

>NTDB_id=982788 NSQ52_RS11245 WP_342473341.1 2213309..2214112(-) (spo0A) [Bacillus sp. FSL W8-1141]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENKEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=982788 NSQ52_RS11245 WP_342473341.1 2213309..2214112(-) (spo0A) [Bacillus sp. FSL W8-1141]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAAAGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCAGTCGATTTGGGTGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCGTCACTCTTTGGCTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCCGAATTTATTGCCATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment