Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ52_RS08890 Genome accession   NZ_CP151973
Coordinates   1767905..1768285 (+) Length   126 a.a.
NCBI ID   WP_234891323.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1762905..1773285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS08880 (NSQ52_08880) - 1764628..1765536 (+) 909 WP_045034804.1 trypsin-like serine protease -
  NSQ52_RS08885 (NSQ52_08885) - 1765683..1767677 (+) 1995 WP_342474072.1 glycosyltransferase family 39 protein -
  NSQ52_RS08890 (NSQ52_08890) nucA/comI 1767905..1768285 (+) 381 WP_234891323.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ52_RS08895 (NSQ52_08895) - 1768429..1769277 (+) 849 WP_017359585.1 STAS domain-containing protein -
  NSQ52_RS08900 (NSQ52_08900) - 1769310..1769852 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ52_RS08905 (NSQ52_08905) - 1770149..1770592 (+) 444 WP_144678736.1 hypothetical protein -
  NSQ52_RS08910 (NSQ52_08910) lexA 1770640..1771260 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  NSQ52_RS08915 (NSQ52_08915) yneA 1771420..1771731 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  NSQ52_RS08920 (NSQ52_08920) - 1771749..1772396 (+) 648 WP_017359583.1 recombinase family protein -
  NSQ52_RS08925 (NSQ52_08925) - 1772466..1772696 (+) 231 WP_061419189.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13786.44 Da        Isoelectric Point: 7.9019

>NTDB_id=982786 NSQ52_RS08890 WP_234891323.1 1767905..1768285(+) (nucA/comI) [Bacillus sp. FSL W8-1141]
MGVLLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=982786 NSQ52_RS08890 WP_234891323.1 1767905..1768285(+) (nucA/comI) [Bacillus sp. FSL W8-1141]
ATGGGTGTGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment