Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSQ52_RS06700 Genome accession   NZ_CP151973
Coordinates   1322710..1324815 (-) Length   701 a.a.
NCBI ID   WP_326242483.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317710..1329815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS06675 (NSQ52_06675) - 1317952..1318194 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSQ52_RS06680 (NSQ52_06680) - 1318246..1319745 (-) 1500 WP_007498739.1 ATP-binding protein -
  NSQ52_RS06685 (NSQ52_06685) - 1319950..1320405 (+) 456 WP_003211701.1 MarR family transcriptional regulator -
  NSQ52_RS06690 (NSQ52_06690) motB 1320592..1321359 (-) 768 WP_024719648.1 flagellar motor protein MotB -
  NSQ52_RS06695 (NSQ52_06695) motA 1321352..1322146 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  NSQ52_RS06700 (NSQ52_06700) clpC 1322710..1324815 (-) 2106 WP_326242483.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSQ52_RS06705 (NSQ52_06705) - 1325061..1326104 (+) 1044 WP_268356697.1 hypothetical protein -
  NSQ52_RS06710 (NSQ52_06710) queC 1326380..1327036 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  NSQ52_RS06715 (NSQ52_06715) queD 1327037..1327477 (+) 441 WP_178897126.1 6-carboxytetrahydropterin synthase QueD -
  NSQ52_RS06720 (NSQ52_06720) queE 1327470..1328201 (+) 732 WP_144666412.1 7-carboxy-7-deazaguanine synthase QueE -
  NSQ52_RS06725 (NSQ52_06725) queF 1328217..1328714 (+) 498 WP_003211403.1 preQ(1) synthase -
  NSQ52_RS06730 (NSQ52_06730) - 1328973..1329191 (+) 219 WP_019743915.1 hypothetical protein -
  NSQ52_RS06735 (NSQ52_06735) - 1329316..1329504 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78190.80 Da        Isoelectric Point: 5.1807

>NTDB_id=982778 NSQ52_RS06700 WP_326242483.1 1322710..1324815(-) (clpC) [Bacillus sp. FSL W8-1141]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTISFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=982778 NSQ52_RS06700 WP_326242483.1 1322710..1324815(-) (clpC) [Bacillus sp. FSL W8-1141]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAT
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAAGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAACTAGTAGGTGCGACGACATTAAAAGAGTATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTTTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTACAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGCTAACAGACAGCCAAGGCAGAACCATCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCGGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCTTTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.834

100

0.599
  clpE Streptococcus mutans UA159

56.376

100

0.599
  clpE Streptococcus pneumoniae Rx1

55.708

100

0.578
  clpE Streptococcus pneumoniae D39

55.708

100

0.578
  clpE Streptococcus pneumoniae R6

55.708

100

0.578
  clpE Streptococcus pneumoniae TIGR4

55.708

100

0.578
  clpC Bacillus subtilis subsp. subtilis str. 168

53.502

95.72

0.512
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.698

90.728

0.424
  clpC Streptococcus thermophilus LMD-9

44.272

92.154

0.408
  clpC Streptococcus thermophilus LMG 18311

44.118

92.154

0.407
  clpC Streptococcus pneumoniae TIGR4

44.322

90.442

0.401
  clpC Streptococcus pneumoniae Rx1

44.515

89.729

0.399
  clpC Streptococcus pneumoniae D39

44.515

89.729

0.399
  clpC Streptococcus mutans UA159

43.968

89.872

0.395

Multiple sequence alignment