Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ52_RS00255 Genome accession   NZ_CP151973
Coordinates   47053..47343 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42053..52343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS00215 (NSQ52_00215) - 42086..42415 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  NSQ52_RS00220 (NSQ52_00220) - 42428..42868 (+) 441 WP_008341898.1 YaaR family protein -
  NSQ52_RS00225 (NSQ52_00225) holB 42880..43869 (+) 990 WP_342473799.1 DNA polymerase III subunit delta' -
  NSQ52_RS00230 (NSQ52_00230) - 43872..44699 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  NSQ52_RS00235 (NSQ52_00235) yabA 44714..45067 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  NSQ52_RS00240 (NSQ52_00240) - 45123..45866 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NSQ52_RS00245 (NSQ52_00245) - 45853..46152 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  NSQ52_RS00250 (NSQ52_00250) rsmI 46127..47008 (+) 882 WP_039170319.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NSQ52_RS00255 (NSQ52_00255) abrB 47053..47343 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSQ52_RS00260 (NSQ52_00260) metG 47863..49863 (+) 2001 WP_342473800.1 methionine--tRNA ligase -
  NSQ52_RS00265 (NSQ52_00265) - 49945..50712 (+) 768 WP_017359325.1 TatD family hydrolase -
  NSQ52_RS00270 (NSQ52_00270) - 50957..52159 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=982757 NSQ52_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus sp. FSL W8-1141]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=982757 NSQ52_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus sp. FSL W8-1141]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment