Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NST70_RS12890 Genome accession   NZ_CP151971
Coordinates   2670873..2671688 (-) Length   271 a.a.
NCBI ID   WP_026684896.1    Uniprot ID   -
Organism   Weizmannia sp. FSL K6-0777     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665873..2676688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST70_RS12870 (NST70_12870) - 2666222..2666380 (-) 159 WP_014097362.1 small, acid-soluble spore protein K -
  NST70_RS12875 (NST70_12875) - 2666467..2667447 (-) 981 WP_014097361.1 metal-dependent hydrolase -
  NST70_RS12880 (NST70_12880) mutY 2667626..2668744 (+) 1119 WP_026684724.1 A/G-specific adenine glycosylase -
  NST70_RS12885 (NST70_12885) - 2670575..2670892 (-) 318 WP_014097359.1 YfhH family protein -
  NST70_RS12890 (NST70_12890) recX 2670873..2671688 (-) 816 WP_026684896.1 recombination regulator RecX Regulator
  NST70_RS12895 (NST70_12895) - 2671775..2671897 (+) 123 WP_014097357.1 YfhE family protein -
  NST70_RS12900 (NST70_12900) - 2671978..2672160 (+) 183 WP_017551419.1 YfhD family protein -
  NST70_RS12905 (NST70_12905) trpA 2672419..2673210 (-) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  NST70_RS12910 (NST70_12910) - 2673203..2673607 (-) 405 WP_328229590.1 hypothetical protein -
  NST70_RS12915 (NST70_12915) trpB 2673600..2674805 (-) 1206 WP_071452051.1 tryptophan synthase subunit beta -
  NST70_RS12920 (NST70_12920) trpCF 2674783..2676207 (-) 1425 WP_342475238.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31514.23 Da        Isoelectric Point: 7.5094

>NTDB_id=982719 NST70_RS12890 WP_026684896.1 2670873..2671688(-) (recX) [Weizmannia sp. FSL K6-0777]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAALHIEKDEEAEWEALLQHAEKAKRKYGRLSGYAYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=982719 NST70_RS12890 WP_026684896.1 2670873..2671688(-) (recX) [Weizmannia sp. FSL K6-0777]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGATGGACAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGGAAGGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAAGATGATATCCGGAAAGGCGTTAATACTGCCATCCATTTTCTTTCCTATCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCACCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAACACAACACATAAAGGGCCTGTTGTTATTAGAAGGG
AACTCCAGCAAAAAGGCATTGCACCAGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCGGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCACCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGTAGACTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509

Multiple sequence alignment