Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   NST70_RS04760 Genome accession   NZ_CP151971
Coordinates   1053744..1055558 (+) Length   604 a.a.
NCBI ID   WP_168985946.1    Uniprot ID   -
Organism   Weizmannia sp. FSL K6-0777     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 1048744..1060558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST70_RS04740 (NST70_04740) - 1049559..1050500 (+) 942 WP_029141810.1 ATP-binding cassette domain-containing protein -
  NST70_RS04745 (NST70_04745) spxA 1050779..1051174 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  NST70_RS04750 (NST70_04750) mecA 1051539..1052198 (+) 660 WP_061577837.1 adaptor protein MecA -
  NST70_RS04755 (NST70_04755) - 1052450..1053676 (+) 1227 WP_260832499.1 competence protein CoiA family protein -
  NST70_RS04760 (NST70_04760) pepF 1053744..1055558 (+) 1815 WP_168985946.1 oligoendopeptidase F Regulator
  NST70_RS04765 (NST70_04765) - 1056010..1056198 (-) 189 WP_014095724.1 hypothetical protein -
  NST70_RS04770 (NST70_04770) - 1056666..1057523 (-) 858 WP_014095723.1 ClpXP adapter SpxH family protein -
  NST70_RS04775 (NST70_04775) - 1057520..1057921 (-) 402 WP_342475867.1 globin -
  NST70_RS04780 (NST70_04780) - 1058895..1059065 (+) 171 WP_155375939.1 hypothetical protein -

Sequence


Protein


Download         Length: 604 a.a.        Molecular weight: 69404.05 Da        Isoelectric Point: 5.0766

>NTDB_id=982695 NST70_RS04760 WP_168985946.1 1053744..1055558(+) (pepF) [Weizmannia sp. FSL K6-0777]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNEFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYRSAREAALSANHIPEKVYDQLVETVNKHLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=982695 NST70_RS04760 WP_168985946.1 1053744..1055558(+) (pepF) [Weizmannia sp. FSL K6-0777]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAGCAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCTGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGATACAACGAATGCCTTTTATCAGGGGATAGACAGCAAAGCGAAAAGTCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACGAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGTTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCAACTGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCGTTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCATATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTTGACGGACTCCATCCGCTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGTGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCATTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.845

98.013

0.498


Multiple sequence alignment