Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST70_RS04030 Genome accession   NZ_CP151971
Coordinates   901840..902790 (+) Length   316 a.a.
NCBI ID   WP_035182202.1    Uniprot ID   A0AAN0T8M8
Organism   Weizmannia sp. FSL K6-0777     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 896840..907790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST70_RS04015 (NST70_04015) - 897697..899133 (+) 1437 WP_017551675.1 S41 family peptidase -
  NST70_RS04020 (NST70_04020) - 899383..899592 (+) 210 WP_046721397.1 hypothetical protein -
  NST70_RS04025 (NST70_04025) - 900331..901527 (+) 1197 WP_225621021.1 PDZ domain-containing protein -
  NST70_RS04030 (NST70_04030) ceuB 901840..902790 (+) 951 WP_035182202.1 ABC transporter permease Machinery gene
  NST70_RS04035 (NST70_04035) - 902783..903733 (+) 951 WP_277613376.1 iron chelate uptake ABC transporter family permease subunit -
  NST70_RS04040 (NST70_04040) - 903727..904485 (+) 759 WP_342475795.1 ATP-binding cassette domain-containing protein -
  NST70_RS04045 (NST70_04045) - 904500..905438 (+) 939 WP_342475797.1 siderophore ABC transporter substrate-binding protein -
  NST70_RS04050 (NST70_04050) - 905547..905783 (-) 237 WP_342475799.1 4Fe-4S binding protein -
  NST70_RS04055 (NST70_04055) - 906043..906444 (+) 402 WP_342475801.1 DUF5316 family protein -
  NST70_RS04060 (NST70_04060) - 906478..907170 (+) 693 WP_013858648.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34408.52 Da        Isoelectric Point: 10.0424

>NTDB_id=982686 NST70_RS04030 WP_035182202.1 901840..902790(+) (ceuB) [Weizmannia sp. FSL K6-0777]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=982686 NST70_RS04030 WP_035182202.1 901840..902790(+) (ceuB) [Weizmannia sp. FSL K6-0777]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTAGTTGCGATCATCCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCTCTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACGATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGAAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGTGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment