Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NSS65_RS11625 Genome accession   NZ_CP151970
Coordinates   2252688..2253758 (-) Length   356 a.a.
NCBI ID   WP_041117979.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2247688..2258758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS11575 (NSS65_11575) - 2247781..2248353 (-) 573 WP_034280218.1 signal peptidase I -
  NSS65_RS11580 (NSS65_11580) tapA 2248406..2248933 (-) 528 WP_144496218.1 amyloid fiber anchoring/assembly protein TapA -
  NSS65_RS11585 (NSS65_11585) - 2249234..2249512 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  NSS65_RS11590 (NSS65_11590) - 2249547..2249741 (-) 195 WP_024422974.1 YqzE family protein -
  NSS65_RS11595 (NSS65_11595) comGG 2249801..2250184 (-) 384 WP_144496219.1 competence type IV pilus minor pilin ComGG -
  NSS65_RS11600 (NSS65_11600) comGF 2250181..2250708 (-) 528 WP_326134811.1 competence type IV pilus minor pilin ComGF -
  NSS65_RS11605 (NSS65_11605) comGE 2250620..2250934 (-) 315 WP_264315972.1 competence type IV pilus minor pilin ComGE -
  NSS65_RS11610 (NSS65_11610) comGD 2250918..2251364 (-) 447 WP_326134812.1 competence type IV pilus minor pilin ComGD -
  NSS65_RS11615 (NSS65_11615) comGC 2251357..2251650 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  NSS65_RS11620 (NSS65_11620) comGB 2251667..2252707 (-) 1041 WP_070326500.1 competence type IV pilus assembly protein ComGB -
  NSS65_RS11625 (NSS65_11625) comGA 2252688..2253758 (-) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  NSS65_RS11630 (NSS65_11630) - 2253936..2254811 (-) 876 WP_024422979.1 STAS domain-containing protein -
  NSS65_RS11640 (NSS65_11640) - 2255035..2255415 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSS65_RS11645 (NSS65_11645) - 2255628..2255870 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NSS65_RS11650 (NSS65_11650) - 2255916..2256554 (-) 639 WP_326134813.1 MBL fold metallo-hydrolase -
  NSS65_RS11655 (NSS65_11655) - 2256712..2256885 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NSS65_RS11660 (NSS65_11660) - 2257109..2257423 (-) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -
  NSS65_RS11665 (NSS65_11665) - 2257500..2258753 (-) 1254 WP_326134814.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40398.79 Da        Isoelectric Point: 9.4061

>NTDB_id=982654 NSS65_RS11625 WP_041117979.1 2252688..2253758(-) (comGA) [Bacillus sp. FSL K6-1006]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRNGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=982654 NSS65_RS11625 WP_041117979.1 2252688..2253758(-) (comGA) [Bacillus sp. FSL K6-1006]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTGTCATTTCGTGTTGATTCAGATTTAATCCAGCAGCGAACCATTGATAAAAAAAGCGGAG
AGAGGCTTATTGCACATTTTAAGTTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGCTCACTAGCT
GTGATGCTAAGAAACGGTCAAGTGTTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTATATTCATTGATTCAGTTT
GCAAAAAAGAATTTTAACCGAAATATTATTACCCTTGAAGATCCTGTCGAAACAAGGAATGAAGAAGTGCTGCAGGTTCA
AGTGAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATTTTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTACCGTATGCTTGAATTTGGTGTGACGATGAATGAACTTGAACAAACAATGGTTGC
GATTGCTGCCCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAGAGATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAGCTGCTGTTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643

Multiple sequence alignment