Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSS65_RS10410 Genome accession   NZ_CP151970
Coordinates   2038401..2039036 (+) Length   211 a.a.
NCBI ID   WP_044333249.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033401..2044036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS10370 (NSS65_10370) - 2033551..2034669 (+) 1119 WP_326134798.1 NADH-dependent flavin oxidoreductase -
  NSS65_RS10375 (NSS65_10375) - 2034723..2035229 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  NSS65_RS10380 (NSS65_10380) - 2035399..2035818 (+) 420 WP_034280483.1 Hsp20/alpha crystallin family protein -
  NSS65_RS10385 (NSS65_10385) - 2035839..2036300 (-) 462 WP_061109277.1 YppG family protein -
  NSS65_RS10390 (NSS65_10390) - 2036409..2036789 (-) 381 WP_260983447.1 YppE family protein -
  NSS65_RS10395 (NSS65_10395) - 2036839..2037072 (-) 234 WP_224426684.1 DUF5446 family protein -
  NSS65_RS10400 (NSS65_10400) sspM 2037270..2037374 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  NSS65_RS10405 (NSS65_10405) - 2037398..2038354 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  NSS65_RS10410 (NSS65_10410) recU 2038401..2039036 (+) 636 WP_044333249.1 Holliday junction resolvase RecU Machinery gene
  NSS65_RS10415 (NSS65_10415) - 2039056..2041764 (+) 2709 WP_144496180.1 PBP1A family penicillin-binding protein -
  NSS65_RS10420 (NSS65_10420) - 2041801..2042310 (-) 510 WP_111926517.1 YpoC family protein -
  NSS65_RS10425 (NSS65_10425) nth 2042307..2042969 (-) 663 WP_034280464.1 endonuclease III -
  NSS65_RS10430 (NSS65_10430) - 2042987..2043691 (-) 705 WP_144496181.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24301.64 Da        Isoelectric Point: 9.7504

>NTDB_id=982649 NSS65_RS10410 WP_044333249.1 2038401..2039036(+) (recU) [Bacillus sp. FSL K6-1006]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=982649 NSS65_RS10410 WP_044333249.1 2038401..2039036(+) (recU) [Bacillus sp. FSL K6-1006]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCTGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment