Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSS65_RS08145 Genome accession   NZ_CP151970
Coordinates   1580505..1581407 (+) Length   300 a.a.
NCBI ID   WP_034281769.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1575505..1586407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS08125 (NSS65_08125) - 1576168..1577907 (+) 1740 WP_034281767.1 hypothetical protein -
  NSS65_RS08130 (NSS65_08130) - 1577904..1578179 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSS65_RS08135 (NSS65_08135) sucC 1578356..1579516 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSS65_RS08140 (NSS65_08140) sucD 1579539..1580441 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSS65_RS08145 (NSS65_08145) dprA 1580505..1581407 (+) 903 WP_034281769.1 DNA-processing protein DprA Machinery gene
  NSS65_RS08150 (NSS65_08150) topA 1581601..1583676 (+) 2076 WP_034281770.1 type I DNA topoisomerase -
  NSS65_RS08155 (NSS65_08155) trmFO 1583747..1585051 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS65_RS08160 (NSS65_08160) xerC 1585114..1586031 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34155.53 Da        Isoelectric Point: 8.8758

>NTDB_id=982644 NSS65_RS08145 WP_034281769.1 1580505..1581407(+) (dprA) [Bacillus sp. FSL K6-1006]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=982644 NSS65_RS08145 WP_034281769.1 1580505..1581407(+) (dprA) [Bacillus sp. FSL K6-1006]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCGTTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGAAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCAGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387

Multiple sequence alignment