Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSS65_RS06880 Genome accession   NZ_CP151970
Coordinates   1334471..1336573 (-) Length   700 a.a.
NCBI ID   WP_120207160.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329471..1341573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS06855 (NSS65_06855) - 1329888..1330130 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSS65_RS06860 (NSS65_06860) - 1330177..1331682 (-) 1506 WP_034281538.1 ATP-binding protein -
  NSS65_RS06865 (NSS65_06865) - 1331887..1332342 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  NSS65_RS06870 (NSS65_06870) motB 1332536..1333306 (-) 771 WP_144496609.1 flagellar motor protein MotB -
  NSS65_RS06875 (NSS65_06875) motA 1333299..1334093 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  NSS65_RS06880 (NSS65_06880) clpC 1334471..1336573 (-) 2103 WP_120207160.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSS65_RS06885 (NSS65_06885) - 1336818..1337861 (+) 1044 WP_120207158.1 hypothetical protein -
  NSS65_RS06890 (NSS65_06890) queC 1338137..1338793 (+) 657 WP_046310763.1 7-cyano-7-deazaguanine synthase QueC -
  NSS65_RS06895 (NSS65_06895) queD 1338794..1339234 (+) 441 WP_034281544.1 6-carboxytetrahydropterin synthase QueD -
  NSS65_RS06900 (NSS65_06900) queE 1339227..1339958 (+) 732 WP_034281545.1 7-carboxy-7-deazaguanine synthase QueE -
  NSS65_RS06905 (NSS65_06905) queF 1339974..1340471 (+) 498 WP_024426839.1 preQ(1) synthase -
  NSS65_RS06910 (NSS65_06910) - 1340947..1341303 (-) 357 WP_061109758.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77946.56 Da        Isoelectric Point: 5.0736

>NTDB_id=982640 NSS65_RS06880 WP_120207160.1 1334471..1336573(-) (clpC) [Bacillus sp. FSL K6-1006]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAASHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDQLTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=982640 NSS65_RS06880 WP_120207160.1 1334471..1336573(-) (clpC) [Bacillus sp. FSL K6-1006]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAAGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGAGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAGCTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTTATCGTAGATGAGCCAACACAAGATGAAGCAATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATCAGCTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAACATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTTCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTAAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

53.433

95.714

0.511
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.484

90.857

0.431
  clpC Streptococcus thermophilus LMD-9

45.975

92.286

0.424
  clpC Streptococcus thermophilus LMG 18311

45.82

92.286

0.423
  clpC Streptococcus pneumoniae TIGR4

44.513

92.429

0.411
  clpC Streptococcus pneumoniae Rx1

44.704

91.714

0.41
  clpC Streptococcus pneumoniae D39

44.704

91.714

0.41
  clpC Streptococcus mutans UA159

44.15

91.571

0.404

Multiple sequence alignment