Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSS65_RS01930 Genome accession   NZ_CP151970
Coordinates   360839..361267 (-) Length   142 a.a.
NCBI ID   WP_024424305.1    Uniprot ID   A0A5C0WGQ8
Organism   Bacillus sp. FSL K6-1006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355839..366267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS01900 (NSS65_01900) - 356001..356330 (+) 330 WP_024424311.1 YckD family protein -
  NSS65_RS01905 (NSS65_01905) - 356374..357138 (-) 765 WP_034283296.1 MBL fold metallo-hydrolase -
  NSS65_RS01910 (NSS65_01910) - 357254..357670 (+) 417 WP_180951418.1 Lrp/AsnC family transcriptional regulator -
  NSS65_RS01915 (NSS65_01915) - 357699..358505 (+) 807 WP_326134940.1 AAC(3) family N-acetyltransferase -
  NSS65_RS01920 (NSS65_01920) - 358507..358893 (-) 387 WP_034283302.1 competence protein ComJ -
  NSS65_RS01925 (NSS65_01925) - 359014..360711 (-) 1698 WP_326134942.1 methyl-accepting chemotaxis protein -
  NSS65_RS01930 (NSS65_01930) nucA/comI 360839..361267 (-) 429 WP_024424305.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSS65_RS01935 (NSS65_01935) - 361635..363704 (+) 2070 WP_342467339.1 hydantoinase/oxoprolinase family protein -
  NSS65_RS01940 (NSS65_01940) - 363694..365682 (+) 1989 WP_070326676.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15971.96 Da        Isoelectric Point: 6.2215

>NTDB_id=982623 NSS65_RS01930 WP_024424305.1 360839..361267(-) (nucA/comI) [Bacillus sp. FSL K6-1006]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=982623 NSS65_RS01930 WP_024424305.1 360839..361267(-) (nucA/comI) [Bacillus sp. FSL K6-1006]
ATGAAACTTCTTAAAATGATTCTCTTGCTCTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCAGACG
GCACAAGAATCCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535

Multiple sequence alignment