Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NSS65_RS00020 Genome accession   NZ_CP151970
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_144496519.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS65_RS00005 (NSS65_00005) dnaA 1..1341 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  NSS65_RS00010 (NSS65_00010) dnaN 1538..2674 (+) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  NSS65_RS00015 (NSS65_00015) yaaA 2825..3040 (+) 216 WP_144496518.1 S4 domain-containing protein YaaA -
  NSS65_RS00020 (NSS65_00020) recF 3057..4169 (+) 1113 WP_144496519.1 DNA replication/repair protein RecF Machinery gene
  NSS65_RS00025 (NSS65_00025) - 4187..4432 (+) 246 WP_034283648.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  NSS65_RS00030 (NSS65_00030) gyrB 4490..6406 (+) 1917 WP_041118480.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NSS65_RS00035 (NSS65_00035) gyrA 6639..9143 (+) 2505 WP_034283649.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42573.66 Da        Isoelectric Point: 7.3663

>NTDB_id=982618 NSS65_RS00020 WP_144496519.1 3057..4169(+) (recF) [Bacillus sp. FSL K6-1006]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVIKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=982618 NSS65_RS00020 WP_144496519.1 3057..4169(+) (recF) [Bacillus sp. FSL K6-1006]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
TATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCATTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGATCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATAGACCGAGGGGTGACACTGTGGGGGCCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGCCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CATTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGGCGAGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGTATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment