Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST62_RS12535 Genome accession   NZ_CP151968
Coordinates   2524414..2525367 (-) Length   317 a.a.
NCBI ID   WP_141602631.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-8385     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2519414..2530367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST62_RS12510 (NST62_12510) zupT 2519763..2520578 (-) 816 WP_141602635.1 zinc transporter ZupT -
  NST62_RS12515 (NST62_12515) - 2520713..2521324 (-) 612 WP_246045864.1 phosphatase PAP2 family protein -
  NST62_RS12520 (NST62_12520) - 2521520..2522536 (-) 1017 WP_141602634.1 siderophore ABC transporter substrate-binding protein -
  NST62_RS12525 (NST62_12525) - 2522704..2523471 (-) 768 WP_141602633.1 ABC transporter ATP-binding protein -
  NST62_RS12530 (NST62_12530) - 2523468..2524424 (-) 957 WP_141602632.1 iron chelate uptake ABC transporter family permease subunit -
  NST62_RS12535 (NST62_12535) ceuB 2524414..2525367 (-) 954 WP_141602631.1 ABC transporter permease Machinery gene
  NST62_RS12540 (NST62_12540) - 2525586..2527079 (-) 1494 WP_181733265.1 peptide MFS transporter -
  NST62_RS12545 (NST62_12545) hflX 2527353..2528636 (-) 1284 WP_141602629.1 GTPase HflX -
  NST62_RS12550 (NST62_12550) putP 2528736..2530226 (-) 1491 WP_328215990.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34789.07 Da        Isoelectric Point: 9.6404

>NTDB_id=982576 NST62_RS12535 WP_141602631.1 2524414..2525367(-) (ceuB) [Ureibacillus sp. FSL K6-8385]
MRLWVLILAAIILSFISLFIGAIDIKPADLLDWDSQQAQIFLISRVPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISILLFSQAAYMQKIIFSFVFAFAGTILFMQILDRIKFKDPVFVPLIGIMYGNILSSITTFFAYEGDLI
QNINTWLMGSFMLIISGRYELLYVSVPAIILAYLYANKFTVAGMGEDFAKNLGLSYKAVLNLGLILVAIISTTVVLTVGV
IPYLGLIVPNIVSIYMGDNLRKTIPHTIVLGVVFLLICDIIGRVVVYPYEIPVNVTVAVIGSLLFLIMLFRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=982576 NST62_RS12535 WP_141602631.1 2524414..2525367(-) (ceuB) [Ureibacillus sp. FSL K6-8385]
ATGAGGTTATGGGTATTGATCTTAGCAGCAATCATCCTGTCCTTCATCTCGCTGTTCATAGGAGCAATCGACATCAAACC
CGCTGATTTGTTGGATTGGGATTCGCAGCAGGCGCAAATTTTTTTGATCAGCAGGGTGCCCCGGTTGCTTGCAATCATTT
TAGCGGGTGCAGGAATGAGTATTGCTGGTTTAATTATGCAGAGTTTAAGCAGAAATAAATTCGTATCACCTACTACGGCA
GGCACATTGGATGCAGCGAAGCTGGGAATTTTGATTTCCATCTTATTGTTCTCGCAAGCGGCATATATGCAAAAAATTAT
TTTCAGCTTTGTTTTTGCGTTTGCAGGGACGATCCTGTTCATGCAAATCCTGGACCGGATCAAATTTAAGGATCCTGTGT
TTGTGCCGTTGATCGGTATCATGTACGGTAATATCCTATCCTCCATTACGACTTTTTTCGCGTATGAAGGGGATTTGATC
CAAAACATAAATACTTGGTTAATGGGAAGTTTTATGCTTATTATCTCAGGACGTTATGAACTTTTATATGTCAGTGTTCC
TGCGATCATTTTGGCTTATTTATATGCTAATAAATTTACAGTTGCCGGCATGGGCGAGGATTTTGCCAAAAACTTGGGCT
TAAGTTATAAAGCCGTGCTGAATCTAGGATTAATCCTTGTGGCAATCATCTCGACCACGGTCGTTTTGACGGTCGGGGTC
ATCCCGTACCTGGGATTGATTGTTCCGAATATTGTCTCCATTTATATGGGGGACAATTTGCGCAAAACAATTCCCCATAC
CATTGTATTGGGAGTTGTATTCCTATTAATCTGCGACATTATTGGAAGAGTTGTAGTGTATCCATATGAAATTCCTGTCA
ATGTGACAGTCGCGGTAATAGGCAGTTTGCTCTTCTTAATCATGTTGTTTAGGGGGAGAGCATATGCGAAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

99.685

0.527

Multiple sequence alignment