Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   NST07_RS11210 Genome accession   NZ_CP151967
Coordinates   2538819..2540570 (-) Length   583 a.a.
NCBI ID   WP_342481568.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0340     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2533819..2545570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST07_RS11195 (NST07_11195) - 2533870..2536326 (+) 2457 WP_341091670.1 O-antigen ligase family protein -
  NST07_RS11200 (NST07_11200) - 2536489..2536731 (+) 243 WP_341091672.1 hypothetical protein -
  NST07_RS11205 (NST07_11205) rcrQ 2537059..2538819 (-) 1761 WP_341091673.1 ABC transporter ATP-binding protein Regulator
  NST07_RS11210 (NST07_11210) rcrP 2538819..2540570 (-) 1752 WP_342481568.1 ABC transporter ATP-binding protein Regulator
  NST07_RS11215 (NST07_11215) - 2540691..2541746 (-) 1056 WP_342481569.1 HAMP domain-containing sensor histidine kinase -
  NST07_RS11220 (NST07_11220) - 2541743..2542417 (-) 675 WP_341091676.1 response regulator transcription factor -
  NST07_RS11225 (NST07_11225) - 2542574..2543866 (+) 1293 WP_342481570.1 amidase -
  NST07_RS11230 (NST07_11230) - 2544046..2544873 (-) 828 WP_342481571.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 583 a.a.        Molecular weight: 63799.05 Da        Isoelectric Point: 7.1913

>NTDB_id=982532 NST07_RS11210 WP_342481568.1 2538819..2540570(-) (rcrP) [Paenibacillus sp. FSL L8-0340]
MVTILKYLKPKEWALVGFSLLFIVAQVWLDLELPGYMSDITRLIQTPGSEMSEIITAGVWMLLCALGSLATSIIVAGIAA
RTAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLLKAPILAVWAMLKITGKSWQWSLS
TGVAIGVLILIVGICIVLVLPKFQRLQQLTDNLNRVARENLTGLRVIRAYNAEGYQEDKFGVANNELTRTNLFANNVLSM
LMPSISLIMSGLSLSIYWVGAVLIQNADGAAKLGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLQNGSLTSSKADRVGEVEFKNVSFKYPDAEDYVVEDISFTAKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQSALRNKIGYVSQKAILFGGTVSSNVAFGDNGSNLASDVVDAVYTSQASDFVEKMDGSYEAHVAQGGSNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKEARGTTMLIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQSCSIYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=982532 NST07_RS11210 WP_342481568.1 2538819..2540570(-) (rcrP) [Paenibacillus sp. FSL L8-0340]
ATGGTCACTATACTTAAATACTTGAAACCGAAGGAATGGGCTCTGGTCGGGTTTAGCCTCCTCTTCATTGTTGCACAGGT
ATGGCTGGATTTGGAATTGCCCGGCTATATGAGCGATATTACCCGTCTTATACAGACACCGGGAAGTGAAATGAGCGAAA
TCATTACAGCCGGAGTCTGGATGCTGCTCTGTGCCCTCGGCAGCTTAGCCACCTCCATTATTGTGGCAGGCATTGCCGCC
AGAACCGCGGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTCGATAAGGTACAGTCCTTCTCCATGGAAGAAATCAA
CAACTTTTCTACAGCCAGTCTAATTACCCGGTCCACGAATGACATCACGCAAGTGCAAATGCTGATTGTCATTGGTCTGC
AGCTGCTGTTGAAGGCTCCTATCCTGGCAGTCTGGGCGATGCTCAAGATCACGGGCAAAAGTTGGCAGTGGTCGCTCTCT
ACCGGTGTCGCTATTGGAGTGTTAATCCTGATTGTCGGCATATGTATCGTGCTCGTGCTGCCGAAATTCCAAAGATTACA
GCAACTGACGGACAACCTAAATCGTGTAGCAAGAGAGAACCTCACCGGACTGCGTGTCATTCGCGCGTATAATGCAGAAG
GCTATCAGGAAGATAAATTCGGCGTAGCCAACAACGAGCTTACCCGGACGAATCTCTTCGCTAACAATGTATTGTCCATG
CTGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCTCTATCTATTGGGTAGGTGCTGTGTTGATTCAGAATGC
CGATGGTGCCGCGAAGCTGGGCTTATTTTCCGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCGTTCA
TGATGTTGATCATGATTTTTATTTTAATGCCCCGTGCCCATGTCTCTGCCAAAAGAATCAACGAAGTGCTGGACACTAAA
CCAAGCTTACAGAACGGATCGCTTACTTCCTCCAAGGCGGATCGGGTTGGCGAAGTCGAATTTAAAAATGTCAGCTTCAA
ATATCCTGATGCAGAGGATTATGTTGTTGAGGACATCAGTTTTACGGCAAAAAAAGGAGAAACCGTGGCATTTATCGGTT
CAACCGGATGCGGAAAAAGTACCGTTGTTAACCTGATCCCCCGCTTTTATGATGCTACAGCAGGTGAGGTGCTGGTGGAT
GGTATCAATGTCAACCAATACGAGCAAAGTGCACTGCGCAACAAAATAGGATATGTATCCCAAAAAGCGATTTTGTTTGG
CGGCACGGTAAGCTCCAACGTTGCTTTTGGTGACAACGGAAGTAATCTTGCATCTGATGTCGTTGATGCCGTTTATACCT
CTCAAGCTTCGGATTTTGTGGAAAAGATGGACGGCAGCTACGAGGCTCATGTCGCCCAAGGCGGCTCGAACCTGTCCGGC
GGGCAGAAACAACGTCTGTCCATTGCCCGGGCCATTGCGCGCCGTCCTGAAATATTGATCTTCGACGATTCCTTCTCAGC
CCTTGATTATAAGACAGACCGCAAATTGCGCAGTGAGCTGAAGAAAGAAGCCCGCGGCACAACGATGCTGATTGTTGCCC
AACGAATCGGTACAATCAAAGACGCGGACAAAATTATTGTACTGGAAGCTGGACGTATGGCAGGCATGGGGACACATGAT
GAATTAATGCAGTCCTGTAGTATCTACCAGGAAATTGCCTACTCACAACTTTCTAAGGAGGAGCTGGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.846

100

0.53


Multiple sequence alignment