Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NST07_RS11205 Genome accession   NZ_CP151967
Coordinates   2537059..2538819 (-) Length   586 a.a.
NCBI ID   WP_341091673.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0340     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532059..2543819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST07_RS11185 (NST07_11185) - 2532384..2533319 (+) 936 WP_342481567.1 aminoglycoside phosphotransferase family protein -
  NST07_RS11190 (NST07_11190) - 2533490..2533678 (+) 189 WP_341097619.1 glycerol-3-phosphate acyltransferase -
  NST07_RS11195 (NST07_11195) - 2533870..2536326 (+) 2457 WP_341091670.1 O-antigen ligase family protein -
  NST07_RS11200 (NST07_11200) - 2536489..2536731 (+) 243 WP_341091672.1 hypothetical protein -
  NST07_RS11205 (NST07_11205) rcrQ 2537059..2538819 (-) 1761 WP_341091673.1 ABC transporter ATP-binding protein Regulator
  NST07_RS11210 (NST07_11210) rcrP 2538819..2540570 (-) 1752 WP_342481568.1 ABC transporter ATP-binding protein Regulator
  NST07_RS11215 (NST07_11215) - 2540691..2541746 (-) 1056 WP_342481569.1 HAMP domain-containing sensor histidine kinase -
  NST07_RS11220 (NST07_11220) - 2541743..2542417 (-) 675 WP_341091676.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64330.45 Da        Isoelectric Point: 6.2953

>NTDB_id=982531 NST07_RS11205 WP_341091673.1 2537059..2538819(-) (rcrQ) [Paenibacillus sp. FSL L8-0340]
MNKSKEQLNTWSKLLRYGRKYIPVVLIAIISAAIGTVLTLLGPDKLSEITDLITEGIVTGIDMEAVTSIGLFLVFIYLLS
SVLSLAQGLIMSVVTQKVSKSLRTDLSRKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFVGSLL
MMFKTNVIMTITAIVATVIGFGLMAAIMKKSQKYFQSQQEYLGKINGHVEEVYSGHTVVKAYNGESQMRSTFESLNTNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVAGAILAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDAEEMDNESHKEGHLETAAGKVKFEHVQFAYDNSAKLVIKDFSAEVKPGQKVAIVGPTGAGKTTLVNLLIRFNELM
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDNEIEEACKSVGLHHFIQTLSAGYDTVLNDK
VNLSTGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHHELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=982531 NST07_RS11205 WP_341091673.1 2537059..2538819(-) (rcrQ) [Paenibacillus sp. FSL L8-0340]
ATGAACAAGAGCAAAGAGCAACTCAACACCTGGAGCAAACTTCTCCGCTATGGCAGAAAATATATTCCCGTAGTTCTTAT
TGCAATTATCAGTGCAGCAATCGGTACGGTACTGACTTTGCTCGGGCCGGATAAGCTTTCAGAGATAACAGACTTGATCA
CCGAGGGCATCGTCACCGGTATTGATATGGAAGCTGTAACTTCCATTGGACTCTTCCTTGTATTTATCTATCTCCTTAGC
TCTGTATTGTCTTTGGCACAAGGATTAATTATGTCCGTAGTTACACAAAAGGTTTCCAAAAGCTTAAGAACCGATCTCTC
CCGTAAAATGAACAGGCTTCCGATCTCTTATTATAATAAGTCTACAACCGGTGACATCCTGTCCCGGGTTACAAACGACG
TGGATACCATCGGGCAAGCGTTAAATCAAAGTGTCGGCACACTGGTCACTGCCCTCGCCCTGTTTGTCGGGTCTCTCCTC
ATGATGTTCAAAACGAACGTGATCATGACCATTACAGCGATTGTTGCCACCGTAATTGGCTTTGGCCTCATGGCGGCAAT
TATGAAAAAATCTCAAAAGTATTTTCAAAGCCAGCAAGAATATTTAGGAAAAATCAATGGCCATGTGGAGGAAGTCTATT
CTGGACATACTGTAGTGAAGGCCTACAATGGCGAATCGCAAATGCGCAGTACATTTGAATCCTTGAATACGAATCTAAAA
GATAGTGCATTTAAAGCACAGTTCCTCTCCGGTCTCATGATGCCGATTATGATGTTTATAGGCAATCTGGGGTTTGTGGC
CGTTTGTGTCGCAGGTGCTATACTTGCTATGAACGGAACGATATCCTTTGGGGTTATCGTGGCCTTCATTCTGTATGTCC
GTTATTTCACACAGCCGCTGTCACAGATTGCGCAAGCCGCACAAAGTCTGCAATCGGCGTCTGCCGCAAGCAAACGTGTC
TTTGAATTCCTGGATGCCGAAGAAATGGACAATGAGAGTCACAAGGAAGGACATCTTGAAACCGCTGCGGGCAAAGTGAA
ATTTGAGCATGTGCAATTTGCTTATGACAATTCAGCCAAGCTTGTTATTAAAGATTTCTCTGCAGAGGTTAAGCCTGGAC
AAAAAGTCGCTATAGTCGGTCCTACCGGCGCAGGTAAAACAACGCTTGTAAACCTTCTTATCCGGTTTAATGAATTAATG
GGCGGGGAAATTTATATTGATGATACCCCAATCAGCAGTTTGACCAGAGAAAATATCCATGATTTATTCTGTATGGTTCT
GCAGGATACCTGGCTTTTTGAGGGCACTATCAGGGAAAACCTAGTGTACAACAAAACGGGCGTAACCGATAATGAAATCG
AAGAGGCTTGTAAGTCAGTGGGCTTACACCATTTCATACAGACCTTGAGTGCCGGATACGATACCGTGCTAAATGACAAA
GTCAATTTATCTACCGGGCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTCAAGGACGCGCCGATGCTCATCCTCGA
TGAAGCAACAAGCTCGGTCGATACAAGAACAGAGCTGTTGATTCAGCAGGCGATGGATAAGCTTATGGAAGGAAGAACTT
CCTTCGTGATTGCACATAGGCTCTCAACAATTAAGAATGCCGATGTGATTCTGGTTCTGAAGGATGGCGATATCTTGGAA
AGCGGCAGCCATCATGAACTGCTTGCCAAAAATGGCTTCTATGCGGAGCTTTACAATAGCCAATTCGAACAAGCATCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment