Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   NSQ51_RS04130 Genome accession   NZ_CP151966
Coordinates   791153..792976 (+) Length   607 a.a.
NCBI ID   WP_033015653.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-0789     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 786153..797976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ51_RS04110 (NSQ51_04110) - 786477..787139 (-) 663 WP_121650085.1 TerC family protein -
  NSQ51_RS04115 (NSQ51_04115) mecA 787350..788030 (+) 681 WP_033015647.1 adaptor protein MecA -
  NSQ51_RS04120 (NSQ51_04120) cls 788127..789635 (+) 1509 WP_049624940.1 cardiolipin synthase -
  NSQ51_RS04125 (NSQ51_04125) - 789825..791153 (+) 1329 WP_033015650.1 competence protein CoiA family protein -
  NSQ51_RS04130 (NSQ51_04130) pepF 791153..792976 (+) 1824 WP_033015653.1 oligoendopeptidase F Regulator
  NSQ51_RS04135 (NSQ51_04135) - 792990..793187 (-) 198 WP_033015654.1 hypothetical protein -
  NSQ51_RS04140 (NSQ51_04140) spxH 793617..794510 (-) 894 WP_033015657.1 ClpXP adapter protein SpxH -
  NSQ51_RS04145 (NSQ51_04145) - 794503..794916 (-) 414 WP_033015658.1 globin -
  NSQ51_RS04150 (NSQ51_04150) - 795019..795642 (-) 624 WP_049625211.1 lytic transglycosylase domain-containing protein -
  NSQ51_RS04155 (NSQ51_04155) - 795639..796229 (-) 591 WP_033010440.1 CYTH domain-containing protein -
  NSQ51_RS04160 (NSQ51_04160) - 796365..796742 (+) 378 WP_033015661.1 hypothetical protein -
  NSQ51_RS04165 (NSQ51_04165) - 796887..797525 (+) 639 WP_033010443.1 GTP pyrophosphokinase family protein -

Sequence


Protein


Download         Length: 607 a.a.        Molecular weight: 70185.13 Da        Isoelectric Point: 5.0842

>NTDB_id=982487 NSQ51_RS04130 WP_033015653.1 791153..792976(+) (pepF) [Geobacillus sp. FSL K6-0789]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKALIPKLGEYKGRLGESPEVLYEALQYQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
STLAGTVKKHNFFARVRRYESARQAALDANNIPESVYDNLIATVHEHLPLLHRYVRLRKQVLGLDELHMYDLYTPLVQDV
KMDVTYEEAKQYMLDGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVHNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDHLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKKYFGDEIVVDQEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMEQLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=982487 NSQ51_RS04130 WP_033015653.1 791153..792976(+) (pepF) [Geobacillus sp. FSL K6-0789]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCCGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCTACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCACTGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATACCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACTAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCGGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGTGAGGAAGTCGAAGTCACGCACGGCCGGTTCATTCGCTTTTTAG
AAAGCACGGACCGCCGTGTCCGCCGCGATGCGTTCCATGCGGTGTACCATACGTACGAAAAGTTTCAAAACACGTTTGCC
AGCACGCTTGCCGGAACGGTGAAAAAACATAACTTTTTTGCCCGCGTCCGCCGTTATGAATCGGCGCGCCAAGCGGCGCT
CGATGCCAACAACATCCCGGAGAGCGTGTACGACAACTTGATTGCCACGGTTCATGAACATTTGCCGCTTTTGCATCGCT
ATGTGCGGCTGCGCAAACAAGTGTTGGGGCTTGACGAGCTCCATATGTATGACTTGTACACGCCGCTTGTGCAAGATGTG
AAAATGGACGTGACGTACGAGGAAGCGAAGCAATATATGCTTGACGGGCTGGCGCCGCTCGGCGAGGAGTATGTAGCGAT
CGTCAAAGAAGGGCTTGACAACCGTTGGGTCGATGTGCGCGAGAACAAAGGGAAGCGGAGCGGTGCGTATTCGTCGGGAG
CGTATGGCACCCATCCGTACATTTTGCTCAATTGGCAGGACAACGTTCACAACTTGTTTACGCTCGTCCATGAGTTTGGC
CACTCGGTCCATAGCTACTATACGCGCAAAACGCAGCCGTATCCGTACGCCCATTATTCGATTTTCGTCGCTGAAGTGGC
GTCAACGTGCAATGAAGCGCTCTTGAACGATCACTTGCTGAAAACGATTGATGATGAGAAGAAACGGTTGTACTTGTTGA
ACCATTATCTTGAGGGATTCCGCGGCACTGTCTTTCGGCAGACGATGTTTGCGGAATTCGAGCATCTGATCCACCTGAAG
GCGCAACAGGGCGAAGCGTTAACGGCTGAGACGCTCACCTCGCTTTATTATGATTTAAACAAAAAGTATTTTGGCGATGA
GATTGTGGTCGACCAAGAAATCGGCTTGGAATGGTCGCGCATTCCGCATTTTTATTACAACTATTATGTGTACCAATATG
CGACCGGCTTCAGCGCGGCAACAGCGCTCAGCAAACAAATCTTAGAGGAAGGCGAACCGGCGGTGAAACGGTACATTGAC
TTTTTAAAAGCCGGCAGCTCGGACTACCCAATCGAAGTGCTGAAAAAAGCCGGCGTTGATATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCAGCTGCTTGAGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.771

97.694

0.506


Multiple sequence alignment