Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R8635_RS02005 Genome accession   NZ_AP026924
Coordinates   367571..368281 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 362571..373281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS01990 (PC0062_03890) - 363294..363434 (+) 141 WP_081541372.1 hypothetical protein -
  R8635_RS01995 (PC0062_03900) - 363690..365795 (+) 2106 WP_268217997.1 AAA family ATPase -
  R8635_RS02000 (PC0062_03910) - 365990..367336 (-) 1347 WP_268217916.1 IS1380-like element ISSpn5 family transposase -
  R8635_RS02005 (PC0062_03920) treR 367571..368281 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8635_RS02010 (PC0062_03930) treP 368466..370433 (+) 1968 WP_268217998.1 PTS system trehalose-specific EIIBC component -
  R8635_RS02015 (PC0062_03940) treC 370611..372236 (+) 1626 WP_000171222.1 alpha,alpha-phosphotrehalase -
  R8635_RS02020 (PC0062_03950) - 372492..372740 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=98246 R8635_RS02005 WP_000760673.1 367571..368281(-) (treR) [Streptococcus pneumoniae strain PZ900700063]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=98246 R8635_RS02005 WP_000760673.1 367571..368281(-) (treR) [Streptococcus pneumoniae strain PZ900700063]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment