Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACKVDO_RS05890 Genome accession   NZ_CP183138
Coordinates   1234967..1235338 (+) Length   123 a.a.
NCBI ID   WP_106464849.1    Uniprot ID   -
Organism   Escherichia coli strain 774     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229967..1240338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVDO_RS05880 (ACKVDO_05845) hupB 1232463..1232753 (+) 291 WP_254892905.1 nucleoid-associated protein HU-beta -
  ACKVDO_RS05885 (ACKVDO_05850) ppiD 1232945..1234816 (+) 1872 WP_000969368.1 peptidylprolyl isomerase -
  ACKVDO_RS05890 (ACKVDO_05855) comE1/comEA 1234967..1235338 (+) 372 WP_106464849.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACKVDO_RS05895 (ACKVDO_05860) fadM 1235432..1235830 (+) 399 WP_001194534.1 long-chain acyl-CoA thioesterase FadM -
  ACKVDO_RS05900 (ACKVDO_05865) queC 1235882..1236577 (-) 696 WP_000817229.1 7-cyano-7-deazaguanine synthase QueC -
  ACKVDO_RS05905 (ACKVDO_05870) ybaE 1236642..1238342 (-) 1701 WP_001238190.1 SgrR family transcriptional regulator -
  ACKVDO_RS05910 (ACKVDO_05875) cof 1238442..1239260 (+) 819 WP_106464850.1 HMP-PP phosphatase -
  ACKVDO_RS05915 (ACKVDO_05880) decR 1239413..1239871 (+) 459 WP_000884589.1 DNA-binding transcriptional regulator DecR -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 12731.70 Da        Isoelectric Point: 8.9767

>NTDB_id=982406 ACKVDO_RS05890 WP_106464849.1 1234967..1235338(+) (comE1/comEA) [Escherichia coli strain 774]
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRLSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLLERNLAVLTL

Nucleotide


Download         Length: 372 bp        

>NTDB_id=982406 ACKVDO_RS05890 WP_106464849.1 1234967..1235338(+) (comE1/comEA) [Escherichia coli strain 774]
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGCGCGCTGGCGGCAGC
TTCTGTGGCGAAACCGACGGCGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTACCGGCGAAAG
CCAGTGACGAAGAAGGCACCCGGCTCAGCATTAATAATGCCAGCGCGGAAGAGCTAGCCCGCGCGATGAATGGCGTTGGC
CTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTAAAGCAGGTGCC
GGGGATGGGCAATTCGCTGCTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(60-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

38.793

94.309

0.366