Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHH57_RS21380 Genome accession   NZ_CP151963
Coordinates   4813188..4814141 (-) Length   317 a.a.
NCBI ID   WP_025721924.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0442     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4808188..4819141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH57_RS21355 (MHH57_21355) - 4808660..4809571 (-) 912 WP_342434484.1 aldo/keto reductase -
  MHH57_RS21360 (MHH57_21360) - 4809726..4810469 (-) 744 WP_165149478.1 alpha/beta hydrolase-fold protein -
  MHH57_RS21365 (MHH57_21365) - 4810503..4811483 (-) 981 WP_209949893.1 siderophore ABC transporter substrate-binding protein -
  MHH57_RS21370 (MHH57_21370) - 4811496..4812254 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  MHH57_RS21375 (MHH57_21375) - 4812248..4813198 (-) 951 WP_209949892.1 iron chelate uptake ABC transporter family permease subunit -
  MHH57_RS21380 (MHH57_21380) ceuB 4813188..4814141 (-) 954 WP_025721924.1 ABC transporter permease Machinery gene
  MHH57_RS21385 (MHH57_21385) - 4814467..4815144 (+) 678 WP_340933969.1 response regulator transcription factor -
  MHH57_RS21390 (MHH57_21390) - 4815141..4816058 (+) 918 WP_342434485.1 HAMP domain-containing sensor histidine kinase -
  MHH57_RS21395 (MHH57_21395) - 4816167..4816844 (+) 678 WP_342434486.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=982399 MHH57_RS21380 WP_025721924.1 4813188..4814141(-) (ceuB) [Paenibacillus sp. FSL H7-0442]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=982399 MHH57_RS21380 WP_025721924.1 4813188..4814141(-) (ceuB) [Paenibacillus sp. FSL H7-0442]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTAGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTTTCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTTTAGGGGGAACGCTGATTTTCATGAAGATACTGGATAAAATCCGGTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTCTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATT
CAGGGCATTTCCTCGTGGATGCAGGGAGATTTTTCTCTCATTATGAGTGGTCGCTATGAGATGCTGTATCTTAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCAGCCAATTTGGGAG
TTCATTACAAGCGTACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTAGTTGTACCCAATCTCGTCAGCATGTATATGGGGGATAATTTGAAAAAAAGTCTGGCCCATAC
AGCGATCCTGGGCGCCGTTTTTGTGCTGTTTTGCGACATTTTGGGACGGGTCATCATTTATCCGTATGAAATTTCTGTAG
GACTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment