Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   MHH57_RS12050 Genome accession   NZ_CP151963
Coordinates   2704995..2706845 (+) Length   616 a.a.
NCBI ID   WP_342435120.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0442     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2699995..2711845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH57_RS12035 (MHH57_12035) - 2701158..2702180 (+) 1023 WP_342435119.1 NADH:flavin oxidoreductase/NADH oxidase -
  MHH57_RS12040 (MHH57_12040) - 2702755..2703165 (+) 411 WP_069011340.1 MarR family transcriptional regulator -
  MHH57_RS12045 (MHH57_12045) rcrP 2703239..2705002 (+) 1764 WP_039275165.1 ABC transporter ATP-binding protein Regulator
  MHH57_RS12050 (MHH57_12050) rcrQ 2704995..2706845 (+) 1851 WP_342435120.1 ABC transporter ATP-binding protein Regulator
  MHH57_RS12055 (MHH57_12055) - 2706967..2707275 (+) 309 WP_342435121.1 hypothetical protein -

Sequence


Protein


Download         Length: 616 a.a.        Molecular weight: 67841.19 Da        Isoelectric Point: 5.6049

>NTDB_id=982389 MHH57_RS12050 WP_342435120.1 2704995..2706845(+) (rcrQ) [Paenibacillus sp. FSL H7-0442]
MDKNEHTVDSQQMKMNQPGPMGKGPTGGRGGGEKANNFKKTISQLASYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVFVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFSLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=982389 MHH57_RS12050 WP_342435120.1 2704995..2706845(+) (rcrQ) [Paenibacillus sp. FSL H7-0442]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCCAGGTCCCATGGGCAAAGGTCCCACGGG
GGGCAGGGGTGGTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGCCAGCTTGCATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGCCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCAGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTTTTGTATTAGCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GAACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGCTAAACAACAGTCTCGGCACGCTTGTTAGTGCGCTGGCCACTTTCGT
GGGAGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTAGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTCTATAACGGGGAACAAGCAGCCAAGGAGGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACCATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCAGCAACCAATTTGCAATCGGCTGCTGCTGC
CAGTGAACGTGTATTCGAATTTTTGGGTGAAGAAGAATTGGCGGATGAAAGTGACAAGACTATGAAGCTGGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTACTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACTGAT
GAGCAGGTAGAAGCTGCATGTAGAGCGGTGGGACTGCACAGTTTCATTAAAACACTGCCGCAGGGATATGATACAGTTCT
GGATGACAAAGCCAATCTCTCTGCGGGTCAAAAGCAATTGATTACCATTGCAAGGGCGATGATTGAAGATTCACCTATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTAGCAAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCGTCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.153

93.669

0.526


Multiple sequence alignment