Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE49_RS18165 Genome accession   NZ_CP151962
Coordinates   3527293..3527982 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL L8-0358     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3522293..3532982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS18130 (NYE49_18130) flgN 3522473..3522955 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NYE49_RS18135 (NYE49_18135) flgM 3522971..3523237 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE49_RS18140 (NYE49_18140) - 3523318..3523737 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYE49_RS18145 (NYE49_18145) comFC 3523811..3524533 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  NYE49_RS18150 (NYE49_18150) comFB 3524497..3524793 (-) 297 WP_015483764.1 late competence protein ComFB -
  NYE49_RS18155 (NYE49_18155) comFA 3524853..3526244 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  NYE49_RS18160 (NYE49_18160) - 3526350..3527195 (-) 846 WP_342410578.1 DegV family protein -
  NYE49_RS18165 (NYE49_18165) degU 3527293..3527982 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE49_RS18170 (NYE49_18170) degS 3528065..3529222 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE49_RS18175 (NYE49_18175) - 3529439..3530092 (+) 654 WP_342410579.1 YigZ family protein -
  NYE49_RS18180 (NYE49_18180) tagV 3530092..3531264 (+) 1173 WP_123373717.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYE49_RS18185 (NYE49_18185) - 3531337..3532413 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=982366 NYE49_RS18165 WP_003219701.1 3527293..3527982(-) (degU) [Bacillus sp. FSL L8-0358]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=982366 NYE49_RS18165 WP_003219701.1 3527293..3527982(-) (degU) [Bacillus sp. FSL L8-0358]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACGCATGCCCTGAAAACAGGTGCAAGGGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment