Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYE49_RS12665 Genome accession   NZ_CP151962
Coordinates   2475275..2476042 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus sp. FSL L8-0358     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2470275..2481042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS12645 (NYE49_12645) - 2470449..2471261 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NYE49_RS12650 (NYE49_12650) ccpN 2471287..2471925 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NYE49_RS12655 (NYE49_12655) glyS 2472058..2474097 (-) 2040 WP_047182890.1 glycine--tRNA ligase subunit beta -
  NYE49_RS12660 (NYE49_12660) glyQ 2474090..2474977 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NYE49_RS12665 (NYE49_12665) recO 2475275..2476042 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  NYE49_RS12670 (NYE49_12670) - 2476079..2476222 (-) 144 WP_003230053.1 YqzL family protein -
  NYE49_RS12675 (NYE49_12675) era 2476370..2477275 (-) 906 WP_003230051.1 GTPase Era -
  NYE49_RS12680 (NYE49_12680) - 2477256..2477666 (-) 411 WP_003230049.1 cytidine deaminase -
  NYE49_RS12685 (NYE49_12685) - 2477785..2478156 (-) 372 WP_047182891.1 diacylglycerol kinase family protein -
  NYE49_RS12690 (NYE49_12690) ybeY 2478137..2478610 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  NYE49_RS12695 (NYE49_12695) pgpH 2478611..2480746 (-) 2136 WP_080344213.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=982345 NYE49_RS12665 WP_014477369.1 2475275..2476042(-) (recO) [Bacillus sp. FSL L8-0358]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=982345 NYE49_RS12665 WP_014477369.1 2475275..2476042(-) (recO) [Bacillus sp. FSL L8-0358]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment