Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE49_RS11145 Genome accession   NZ_CP151962
Coordinates   2206657..2207277 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0358     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2201657..2212277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS11105 (NYE49_11105) - 2202788..2203294 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  NYE49_RS11110 (NYE49_11110) - 2203432..2203851 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  NYE49_RS11115 (NYE49_11115) - 2203872..2204249 (-) 378 WP_342410226.1 YppG family protein -
  NYE49_RS11120 (NYE49_11120) - 2204437..2204625 (+) 189 WP_003230690.1 YppF family protein -
  NYE49_RS11125 (NYE49_11125) - 2204664..2205035 (-) 372 WP_021481525.1 YppE family protein -
  NYE49_RS11130 (NYE49_11130) - 2205081..2205326 (-) 246 WP_342410227.1 YppD family protein -
  NYE49_RS11135 (NYE49_11135) sspM 2205525..2205629 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NYE49_RS11140 (NYE49_11140) - 2205654..2206616 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  NYE49_RS11145 (NYE49_11145) recU 2206657..2207277 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYE49_RS11150 (NYE49_11150) - 2207299..2210058 (+) 2760 WP_047182791.1 PBP1A family penicillin-binding protein -
  NYE49_RS11155 (NYE49_11155) - 2210134..2210628 (-) 495 WP_047182792.1 YpoC family protein -
  NYE49_RS11160 (NYE49_11160) nth 2210625..2211284 (-) 660 WP_015483371.1 endonuclease III -
  NYE49_RS11165 (NYE49_11165) dnaD 2211303..2212001 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=982333 NYE49_RS11145 WP_004399067.1 2206657..2207277(+) (recU) [Bacillus sp. FSL L8-0358]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=982333 NYE49_RS11145 WP_004399067.1 2206657..2207277(+) (recU) [Bacillus sp. FSL L8-0358]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment