Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYE49_RS05700 Genome accession   NZ_CP151962
Coordinates   1102961..1103539 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0358     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097961..1108539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS05680 (NYE49_05680) hemAT 1098472..1099770 (-) 1299 WP_174616632.1 heme-based aerotactic transducer HemAT -
  NYE49_RS05685 (NYE49_05685) - 1099909..1101438 (-) 1530 WP_174616631.1 FAD-dependent oxidoreductase -
  NYE49_RS05690 (NYE49_05690) - 1101550..1102407 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  NYE49_RS05695 (NYE49_05695) - 1102435..1102668 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NYE49_RS05700 (NYE49_05700) comK 1102961..1103539 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  NYE49_RS05705 (NYE49_05705) - 1103586..1104485 (-) 900 WP_047182383.1 SDR family oxidoreductase -
  NYE49_RS05710 (NYE49_05710) - 1104703..1104972 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  NYE49_RS05715 (NYE49_05715) - 1105016..1106485 (-) 1470 WP_015383277.1 sodium:solute symporter -
  NYE49_RS05720 (NYE49_05720) - 1106482..1106682 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NYE49_RS05725 (NYE49_05725) - 1106890..1107252 (-) 363 WP_003233132.1 hypothetical protein -
  NYE49_RS05730 (NYE49_05730) - 1107404..1108027 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NYE49_RS05735 (NYE49_05735) lepB 1108029..1108535 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=982314 NYE49_RS05700 WP_015483050.1 1102961..1103539(+) (comK) [Bacillus sp. FSL L8-0358]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=982314 NYE49_RS05700 WP_015483050.1 1102961..1103539(+) (comK) [Bacillus sp. FSL L8-0358]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment