Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACKVCM_RS19010 Genome accession   NZ_CP183123
Coordinates   3899983..3900354 (-) Length   123 a.a.
NCBI ID   WP_106464849.1    Uniprot ID   -
Organism   Escherichia coli strain 613     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3894983..3905354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVCM_RS18985 (ACKVCM_18970) decR 3895450..3895908 (-) 459 WP_000884589.1 DNA-binding transcriptional regulator DecR -
  ACKVCM_RS18990 (ACKVCM_18975) cof 3896061..3896879 (-) 819 WP_106464850.1 HMP-PP phosphatase -
  ACKVCM_RS18995 (ACKVCM_18980) ybaE 3896979..3898679 (+) 1701 WP_001238190.1 SgrR family transcriptional regulator -
  ACKVCM_RS19000 (ACKVCM_18985) queC 3898744..3899439 (+) 696 WP_000817229.1 7-cyano-7-deazaguanine synthase QueC -
  ACKVCM_RS19005 (ACKVCM_18990) fadM 3899491..3899889 (-) 399 WP_001194534.1 long-chain acyl-CoA thioesterase FadM -
  ACKVCM_RS19010 (ACKVCM_18995) comE1/comEA 3899983..3900354 (-) 372 WP_106464849.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACKVCM_RS19015 (ACKVCM_19000) ppiD 3900505..3902376 (-) 1872 WP_000969368.1 peptidylprolyl isomerase -
  ACKVCM_RS19020 (ACKVCM_19005) hupB 3902568..3902858 (-) 291 WP_254892905.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 12731.70 Da        Isoelectric Point: 8.9767

>NTDB_id=982291 ACKVCM_RS19010 WP_106464849.1 3899983..3900354(-) (comE1/comEA) [Escherichia coli strain 613]
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRLSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLLERNLAVLTL

Nucleotide


Download         Length: 372 bp        

>NTDB_id=982291 ACKVCM_RS19010 WP_106464849.1 3899983..3900354(-) (comE1/comEA) [Escherichia coli strain 613]
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGCGCGCTGGCGGCAGC
TTCTGTGGCGAAACCGACGGCGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTACCGGCGAAAG
CCAGTGACGAAGAAGGCACCCGGCTCAGCATTAATAATGCCAGCGCGGAAGAGCTAGCCCGCGCGATGAATGGCGTTGGC
CTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTAAAGCAGGTGCC
GGGGATGGGCAATTCGCTGCTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(60-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

38.793

94.309

0.366