Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHI30_RS18135 Genome accession   NZ_CP151961
Coordinates   3539693..3539977 (-) Length   94 a.a.
NCBI ID   WP_075751412.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3534693..3544977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS18115 (MHI30_18115) smpB 3535500..3535973 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  MHI30_RS18120 (MHI30_18120) rnr 3536089..3538392 (-) 2304 WP_075751410.1 ribonuclease R -
  MHI30_RS18125 (MHI30_18125) - 3538406..3539152 (-) 747 WP_075751411.1 carboxylesterase -
  MHI30_RS18130 (MHI30_18130) secG 3539293..3539523 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  MHI30_RS18135 (MHI30_18135) abrB 3539693..3539977 (-) 285 WP_075751412.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHI30_RS18140 (MHI30_18140) - 3540005..3540238 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  MHI30_RS18145 (MHI30_18145) - 3540391..3540792 (+) 402 WP_020452987.1 transcriptional regulator -
  MHI30_RS18150 (MHI30_18150) - 3540964..3541362 (+) 399 WP_075751413.1 helix-turn-helix transcriptional regulator -
  MHI30_RS18155 (MHI30_18155) - 3541411..3542088 (-) 678 WP_075751414.1 ABC transporter permease -
  MHI30_RS18160 (MHI30_18160) - 3542105..3543022 (-) 918 WP_075751415.1 osmoprotectant ABC transporter substrate-binding protein -
  MHI30_RS18165 (MHI30_18165) - 3543036..3543689 (-) 654 WP_075751416.1 ABC transporter permease -
  MHI30_RS18170 (MHI30_18170) - 3543711..3544850 (-) 1140 WP_075751417.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10543.41 Da        Isoelectric Point: 5.1615

>NTDB_id=982283 MHI30_RS18135 WP_075751412.1 3539693..3539977(-) (abrB) [Bacillus sp. FSL L8-0528]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDEENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=982283 MHI30_RS18135 WP_075751412.1 3539693..3539977(-) (abrB) [Bacillus sp. FSL L8-0528]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGATCCGCTCGAAATATACACCGACGAAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGGGGAGCGGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAGTTATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543

Multiple sequence alignment