Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHI30_RS07990 Genome accession   NZ_CP151961
Coordinates   1564624..1564911 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559624..1569911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS07970 (MHI30_07970) - 1561283..1561657 (+) 375 WP_081379902.1 nuclear transport factor 2 family protein -
  MHI30_RS07975 (MHI30_07975) - 1561784..1563016 (-) 1233 WP_075753033.1 aminopeptidase -
  MHI30_RS07980 (MHI30_07980) - 1563106..1563237 (-) 132 WP_003181378.1 protein YkpC -
  MHI30_RS07985 (MHI30_07985) mreBH 1563311..1564318 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  MHI30_RS07990 (MHI30_07990) abrB 1564624..1564911 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHI30_RS07995 (MHI30_07995) - 1565079..1566416 (+) 1338 WP_075753031.1 ATP-binding protein -
  MHI30_RS08000 (MHI30_08000) - 1566480..1567142 (+) 663 WP_020451237.1 TrkA family potassium uptake protein -
  MHI30_RS08005 (MHI30_08005) ade 1567270..1568988 (+) 1719 WP_075753458.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=982252 MHI30_RS07990 WP_020451235.1 1564624..1564911(+) (abrB) [Bacillus sp. FSL L8-0528]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=982252 MHI30_RS07990 WP_020451235.1 1564624..1564911(+) (abrB) [Bacillus sp. FSL L8-0528]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGAATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCTGAA
TTGCTTTTGGAAGAAATTAAAGCCGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment