Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHI30_RS00265 Genome accession   NZ_CP151961
Coordinates   49459..49749 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44459..54749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS00225 (MHI30_00225) - 44482..44811 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  MHI30_RS00230 (MHI30_00230) - 44823..45263 (+) 441 WP_003178158.1 YaaR family protein -
  MHI30_RS00235 (MHI30_00235) holB 45275..46264 (+) 990 WP_075752582.1 DNA polymerase III subunit delta' -
  MHI30_RS00240 (MHI30_00240) - 46267..47094 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  MHI30_RS00245 (MHI30_00245) yabA 47109..47471 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  MHI30_RS00250 (MHI30_00250) - 47536..48279 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MHI30_RS00255 (MHI30_00255) - 48266..48559 (+) 294 WP_075752584.1 GIY-YIG nuclease family protein -
  MHI30_RS00260 (MHI30_00260) rsmI 48534..49409 (+) 876 WP_142238597.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MHI30_RS00265 (MHI30_00265) abrB 49459..49749 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHI30_RS00270 (MHI30_00270) metG 50257..52245 (+) 1989 WP_075752586.1 methionine--tRNA ligase -
  MHI30_RS00275 (MHI30_00275) - 52330..53097 (+) 768 WP_075752587.1 TatD family hydrolase -
  MHI30_RS00280 (MHI30_00280) - 53342..54538 (+) 1197 WP_075752589.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=982225 MHI30_RS00265 WP_085959887.1 49459..49749(-) (abrB) [Bacillus sp. FSL L8-0528]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=982225 MHI30_RS00265 WP_085959887.1 49459..49749(-) (abrB) [Bacillus sp. FSL L8-0528]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCTGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment