Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY35_RS22155 Genome accession   NZ_CP151960
Coordinates   4961321..4962274 (-) Length   317 a.a.
NCBI ID   WP_342444834.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0638     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4956321..4967274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY35_RS22130 (MKY35_22130) - 4956790..4957701 (-) 912 WP_342444829.1 aldo/keto reductase -
  MKY35_RS22135 (MKY35_22135) - 4957859..4958602 (-) 744 WP_342444830.1 alpha/beta hydrolase-fold protein -
  MKY35_RS22140 (MKY35_22140) - 4958636..4959616 (-) 981 WP_342444831.1 siderophore ABC transporter substrate-binding protein -
  MKY35_RS22145 (MKY35_22145) - 4959629..4960387 (-) 759 WP_342444832.1 ABC transporter ATP-binding protein -
  MKY35_RS22150 (MKY35_22150) - 4960381..4961331 (-) 951 WP_342444833.1 iron chelate uptake ABC transporter family permease subunit -
  MKY35_RS22155 (MKY35_22155) ceuB 4961321..4962274 (-) 954 WP_342444834.1 ABC transporter permease Machinery gene
  MKY35_RS22160 (MKY35_22160) - 4962593..4962817 (-) 225 WP_342444835.1 hypothetical protein -
  MKY35_RS22165 (MKY35_22165) - 4963034..4963711 (+) 678 WP_342446690.1 response regulator transcription factor -
  MKY35_RS22170 (MKY35_22170) - 4963708..4964625 (+) 918 WP_342446691.1 HAMP domain-containing sensor histidine kinase -
  MKY35_RS22175 (MKY35_22175) - 4964735..4965412 (+) 678 WP_254329498.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34745.81 Da        Isoelectric Point: 10.0847

>NTDB_id=982214 MKY35_RS22155 WP_342444834.1 4961321..4962274(-) (ceuB) [Paenibacillus sp. FSL L8-0638]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYKISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=982214 MKY35_RS22155 WP_342444834.1 4961321..4962274(-) (ceuB) [Paenibacillus sp. FSL L8-0638]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCTCGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTTTCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGAGGAACACTGATTTTTATGAAGATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACAACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCACTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCGAATTTGGGAG
TTCATTACAAGCGCACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCTAATCTCGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATAAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment