Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ57_RS21110 Genome accession   NZ_CP151958
Coordinates   4801848..4802801 (-) Length   317 a.a.
NCBI ID   WP_129550005.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0502     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4796848..4807801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ57_RS21085 (NSQ57_21085) - 4797198..4798109 (-) 912 WP_342425247.1 aldo/keto reductase -
  NSQ57_RS21090 (NSQ57_21090) - 4798386..4799129 (-) 744 WP_342425248.1 alpha/beta hydrolase-fold protein -
  NSQ57_RS21095 (NSQ57_21095) - 4799163..4800143 (-) 981 WP_342425249.1 siderophore ABC transporter substrate-binding protein -
  NSQ57_RS21100 (NSQ57_21100) - 4800156..4800914 (-) 759 WP_029519266.1 ABC transporter ATP-binding protein -
  NSQ57_RS21105 (NSQ57_21105) - 4800908..4801858 (-) 951 WP_069011647.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ57_RS21110 (NSQ57_21110) ceuB 4801848..4802801 (-) 954 WP_129550005.1 ABC transporter permease Machinery gene
  NSQ57_RS21115 (NSQ57_21115) - 4803125..4803802 (+) 678 WP_029519271.1 response regulator transcription factor -
  NSQ57_RS21120 (NSQ57_21120) - 4803799..4804716 (+) 918 WP_342426137.1 HAMP domain-containing sensor histidine kinase -
  NSQ57_RS21125 (NSQ57_21125) - 4805962..4806090 (-) 129 WP_342425250.1 hypothetical protein -
  NSQ57_RS21130 (NSQ57_21130) - 4806665..4807342 (+) 678 WP_342425251.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=982108 NSQ57_RS21110 WP_129550005.1 4801848..4802801(-) (ceuB) [Paenibacillus sp. FSL L8-0502]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=982108 NSQ57_RS21110 WP_129550005.1 4801848..4802801(-) (ceuB) [Paenibacillus sp. FSL L8-0502]
ATGAAATTGCGCTATTTAATACTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTTTCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAAATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACTTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTCTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAACCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTCGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment