Detailed information NTG0098202

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABXS88_RS12550
• Genome accession: NZ_AP031572
• Coordinates: 2778336..2779553 (+)
• Length: 405 a.a.
• NCBI ID: WP_353672384.1
• Uniprot ID: -
• Organism: Synechocystis sp. LKSZ1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2773336..2784553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXS88_RS12535 (OLK001_24630)	-	2773662..2774927 (+)	1266	WP_353672381.1	hypothetical protein	-
ABXS88_RS12540 (OLK001_24640)	pilB/pilB1	2775046..2777061 (+)	2016	WP_353672382.1	GspE/PulE family protein	Machinery gene
ABXS88_RS12545 (OLK001_24650)	pilT	2777161..2778294 (+)	1134	WP_353672383.1	type IV pilus twitching motility protein PilT	Machinery gene
ABXS88_RS12550 (OLK001_24660)	pilC	2778336..2779553 (+)	1218	WP_353672384.1	type II secretion system F family protein	Machinery gene
ABXS88_RS12555 (OLK001_24670)	-	2779550..2780260 (-)	711	WP_353672385.1	class I SAM-dependent methyltransferase	-
ABXS88_RS12560 (OLK001_24680)	-	2780405..2781721 (+)	1317	WP_353672386.1	deoxyguanosinetriphosphate triphosphohydrolase	-
ABXS88_RS12565 (OLK001_24690)	-	2781789..2782382 (+)	594	WP_353672387.1	rhomboid family intramembrane serine protease	-
ABXS88_RS12570 (OLK001_24700)	lgt	2782432..2783313 (+)	882	WP_353672388.1	prolipoprotein diacylglyceryl transferase	-
ABXS88_RS12575 (OLK001_24710)	cobM	2783325..2784107 (+)	783	WP_353674822.1	precorrin-4 C(11)-methyltransferase	-
ABXS88_RS12580 (OLK001_24720)	-	2784194..2784394 (+)	201	WP_353672389.1	hypothetical protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44218.32 Da
• Isoelectric Point: 7.6217

>NTDB_id=98202 ABXS88_RS12550 WP_353672384.1 2778336..2779553(+) (pilC) [Synechocystis sp. LKSZ1]
MATFVAQVKDSTGKVLKKKVDAMSPEQARLILKQQYPAIGAIKPASGEINLEFLENLLNKVTVKDKAVFSRQFSVMINAG
VAIVRCLSVLGEQCPNPKLKRALGGISSEVQQGNNLSEAMRRYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDVAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFANIFESLGGELPGLTKFMLNLSNFLRSPLAIIPVVVIIVAVFLFKR
YYSTHAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVGDTIPNKIISDAIDGAIAEIQSGGMM
SLALQKAKVFPSLAIQMISIGEETGELDSMMMKVADFYEDEVEQTVKALTSVIEPLMMVFIAGMVGTILLSMYLPMFKIF
DKLGN

Nucleotide

• Length: 1218 bp

>NTDB_id=98202 ABXS88_RS12550 WP_353672384.1 2778336..2779553(+) (pilC) [Synechocystis sp. LKSZ1]
ATGGCTACCTTTGTTGCCCAAGTTAAAGACAGTACCGGTAAAGTCCTGAAAAAAAAGGTGGACGCCATGTCCCCCGAGCA
GGCCCGCCTCATTCTCAAACAACAGTATCCTGCCATCGGAGCGATTAAACCAGCTAGTGGCGAGATTAACCTGGAATTTC
TCGAAAATTTACTCAATAAAGTTACGGTCAAGGACAAGGCCGTGTTTTCCCGCCAATTTTCCGTCATGATCAATGCCGGG
GTGGCTATTGTCCGCTGTTTAAGTGTCCTCGGGGAACAATGTCCCAATCCTAAATTGAAACGGGCCCTAGGCGGCATTAG
CTCAGAAGTCCAGCAAGGGAACAATCTCTCGGAGGCCATGCGCCGCTACCCCGAGTGTTTTGATGACCTCTACGTCAGTA
TGGTAGAAGCTGGAGAAACAGGGGGGGTACTCGATGAAGTCCTCAATCGTCTATCCAAGCTCCTAGAAGACGTGGCTCGC
CTACAAAACCAGATTAAATCGGCCATGGCCTATCCCGTGGCTGTTGGGTTTTTAGCCGTTGTCGCTTTCCTTGGAATGAC
GATTTTTCTAATTCCCGTCTTTGCCAATATTTTTGAAAGCTTAGGCGGCGAATTACCGGGGTTAACAAAATTCATGCTGA
ACCTGAGCAATTTTCTGCGCAGTCCCCTGGCGATTATTCCCGTTGTTGTCATCATTGTTGCGGTTTTTCTATTCAAGCGC
TATTACTCCACCCATGCGGGGCGCCGCCAAGTCGATGCCGTGATGCTTAAACTGCCTCTCTTTGGCCCTCTCAATGAAAA
AACGGCTGTTGCTCGCTTTTGTCGTGTTTTTGGAACCTTAACCCGCTCCGGAGTTCCGATTATTCAGTCCTTGGAAATTG
TTGGTGATACCATTCCCAATAAAATCATTTCCGACGCGATTGATGGGGCCATCGCTGAAATTCAATCCGGGGGAATGATG
AGTCTAGCCTTGCAAAAAGCCAAAGTGTTTCCATCCTTAGCCATTCAAATGATCAGCATTGGCGAAGAAACTGGGGAATT
AGATTCCATGATGATGAAGGTGGCCGACTTCTACGAAGATGAAGTTGAACAAACTGTTAAGGCTTTAACCAGCGTTATCG
AGCCCCTTATGATGGTGTTTATTGCTGGCATGGTCGGCACGATTCTCCTGTCCATGTACCTCCCCATGTTCAAAATCTTT
GACAAACTGGGTAACTAG

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	39.12	100	0.395