Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NST20_RS12355 Genome accession   NZ_CP151954
Coordinates   2489044..2489859 (-) Length   271 a.a.
NCBI ID   WP_342399528.1    Uniprot ID   -
Organism   Weizmannia sp. FSL W8-0676     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484044..2494859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST20_RS12330 (NST20_12330) - 2484520..2485824 (+) 1305 WP_342399525.1 IS1380 family transposase -
  NST20_RS12335 (NST20_12335) mutY 2486161..2487252 (-) 1092 WP_342399526.1 A/G-specific adenine glycosylase -
  NST20_RS12340 (NST20_12340) - 2487430..2488410 (+) 981 WP_342399527.1 metal-dependent hydrolase -
  NST20_RS12345 (NST20_12345) - 2488497..2488655 (+) 159 WP_013860282.1 small, acid-soluble spore protein K -
  NST20_RS12350 (NST20_12350) - 2488746..2489063 (-) 318 WP_013860285.1 YfhH family protein -
  NST20_RS12355 (NST20_12355) recX 2489044..2489859 (-) 816 WP_342399528.1 recombination regulator RecX Regulator
  NST20_RS12360 (NST20_12360) - 2489947..2490069 (+) 123 WP_073193833.1 YfhE family protein -
  NST20_RS12365 (NST20_12365) - 2490148..2490330 (+) 183 WP_061566697.1 YfhD family protein -
  NST20_RS12370 (NST20_12370) trpA 2490590..2491381 (-) 792 WP_342399529.1 tryptophan synthase subunit alpha -
  NST20_RS12375 (NST20_12375) - 2491374..2491517 (-) 144 WP_019721536.1 hypothetical protein -
  NST20_RS12380 (NST20_12380) trpB 2491510..2492709 (-) 1200 WP_342399530.1 tryptophan synthase subunit beta -
  NST20_RS12385 (NST20_12385) trpCF 2492687..2494111 (-) 1425 WP_342399531.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31428.18 Da        Isoelectric Point: 8.2712

>NTDB_id=982010 NST20_RS12355 WP_342399528.1 2489044..2489859(-) (recX) [Weizmannia sp. FSL W8-0676]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVILKLYEMQYLDDAKFAASFVRTQMNTTHKGPVVIERELQQKGIAPELIERALEIFDADQQVEH
ALVLAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEEAEWEALLQHAEKAKRKYGKFSGSAYRQK
MKQFLYRKGFPVDLIDRYLREEGDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=982010 NST20_RS12355 WP_342399528.1 2489044..2489859(-) (recX) [Weizmannia sp. FSL W8-0676]
GTGCCGGTCATTACAAAAATCTCGGTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGACGGCCAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCATCCGGAGTGTCATATTAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGAAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACCCATAAGGGGCCTGTTGTCATTGAAAGGG
AACTTCAGCAAAAAGGCATTGCACCGGAGCTGATCGAAAGGGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAC
GCCCTTGTCCTGGCAGAAAAGCTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAACAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAGCAG
AGTGGGAAGCCCTTCTTCAGCATGCGGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATCCGCCTACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGGGAAGAGGGGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.091

97.048

0.506

Multiple sequence alignment