Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST20_RS03840 Genome accession   NZ_CP151954
Coordinates   819638..820588 (+) Length   316 a.a.
NCBI ID   WP_342400105.1    Uniprot ID   -
Organism   Weizmannia sp. FSL W8-0676     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814638..825588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST20_RS03825 (NST20_03825) - 815040..816023 (+) 984 WP_340702388.1 homoserine dehydrogenase -
  NST20_RS03830 (NST20_03830) - 816475..817911 (+) 1437 WP_061086702.1 S41 family peptidase -
  NST20_RS03835 (NST20_03835) - 818191..819378 (+) 1188 WP_342400104.1 PDZ domain-containing protein -
  NST20_RS03840 (NST20_03840) ceuB 819638..820588 (+) 951 WP_342400105.1 ABC transporter permease Machinery gene
  NST20_RS03845 (NST20_03845) - 820581..821531 (+) 951 WP_195850625.1 iron chelate uptake ABC transporter family permease subunit -
  NST20_RS03850 (NST20_03850) - 821525..822283 (+) 759 WP_017553920.1 ATP-binding cassette domain-containing protein -
  NST20_RS03855 (NST20_03855) - 822298..823236 (+) 939 WP_342400106.1 siderophore ABC transporter substrate-binding protein -
  NST20_RS03860 (NST20_03860) - 823293..823529 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  NST20_RS03865 (NST20_03865) - 823836..824174 (+) 339 WP_328192586.1 DUF5316 domain-containing protein -
  NST20_RS03870 (NST20_03870) - 824248..824940 (+) 693 WP_019721718.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34380.51 Da        Isoelectric Point: 10.0288

>NTDB_id=981981 NST20_RS03840 WP_342400105.1 819638..820588(+) (ceuB) [Weizmannia sp. FSL W8-0676]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSKEQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYAFANRFTVAGMGEDFAKNLGLNYKQVVNLGLVLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRIVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=981981 NST20_RS03840 WP_342400105.1 819638..820588(+) (ceuB) [Weizmannia sp. FSL W8-0676]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAAGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATTATCA
TTGCGGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCGCTGGCCGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACGATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTTTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGAAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGCGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAACCTCGGCCTTGTCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACT
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTACCGTGGCGACCATATGAAAAAAAGCATTACGGTTAC
GGCGCTGCTTGGGGCGGTGTTCCTGCTGTTTTGCGATATTTTGGGGCGCATTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGCGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment