Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   R8625_RS08475 Genome accession   NZ_AP026923
Coordinates   1662683..1663609 (-) Length   308 a.a.
NCBI ID   WP_317649126.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657683..1668609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS08455 (PC0054_16820) treR 1658790..1659500 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8625_RS08460 (PC0054_16830) - 1659533..1660336 (-) 804 WP_115254439.1 ABC transporter ATP-binding protein -
  R8625_RS08465 (PC0054_16840) - 1660349..1661242 (-) 894 WP_130894676.1 ABC transporter permease -
  R8625_RS08470 - 1661254..1662063 (-) 810 Protein_1674 ABC transporter substrate-binding protein -
  R8625_RS08475 (PC0054_16870) amiF 1662683..1663609 (-) 927 WP_317649126.1 ATP-binding cassette domain-containing protein Regulator
  R8625_RS08480 (PC0054_16880) amiE 1663620..1664687 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R8625_RS08485 (PC0054_16890) amiD 1664696..1665622 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R8625_RS08490 (PC0054_16900) amiC 1665622..1667118 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34764.79 Da        Isoelectric Point: 6.6224

>NTDB_id=98198 R8625_RS08475 WP_317649126.1 1662683..1663609(-) (amiF) [Streptococcus pneumoniae strain PZ900700054]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSVVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=98198 R8625_RS08475 WP_317649126.1 1662683..1663609(-) (amiF) [Streptococcus pneumoniae strain PZ900700054]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTGTGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment